SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27626

Length: 318 nt

UniGene Fasta

>uagpf_v2_unigene27626
GATGAGAGGTTTTGAGACCATGTACAATGGTCACACGGGTAGAAAGTTATCTGCCATGATATTTCTAGGTCCAACATATTATCAGCGATTAAAGCATATGGTGGATGACAAGATTCACTCTCGTGGTCGTGGCCCTGTTCAAATTCTCACTCGACAACCGGCAGAAGGACGTTCTCGTGATGGAGGTCTACGTTTTGGAGAGATGGAACGTGATTGTATGATAGCCCATGGAGCTGCTCATTTCCTGAAGAAAGGCTCTTTGACCAAAGTGATGCATATAGGGTCCATGTTTGTGAACGCTGTGGTCTAATTGCTATT

Ace file of the UniGene uagpf_v2_unigene27626

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20290	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	rna polymerase ii second largest subunit	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Leghaemoglobin	IPR001032	-	-
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	RNA polymerase, beta subunit, conserved site	IPR007121	-	-
Sma3	RNA polymerase Rpb2, domain 7	IPR007641	-	-
Sma3	RNA polymerase Rpb2, domain 2	IPR007642	-	-
Sma3	RNA polymerase, beta subunit, protrusion	IPR007644	-	-
Sma3	RNA polymerase Rpb2, domain 3	IPR007645	-	-
Sma3	RNA polymerase Rpb2, domain 4	IPR007646	-	-
Sma3	RNA polymerase Rpb2, domain 5	IPR007647	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABJ4

Fln msg: Overlapping hits, possible frame ERROR between 253 and 241, Distance to subject end: 61 aas, your sequence is shorter than subject: 106 - 135

Fln protein: MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAxxxxxxLFDQSDAYRVHVCERCGLIAI

Protein Length: 107

Fln nts: G_-_ATGAGAGGTTTTGAGACCATGTACAATGGTCACACGGGTAGAAAGTTATCTGCCATGATATTTCTAGGTCCAACATATTATCAGCGATTAAAGCATATGGTGGATGACAAGATTCACTCTCGTGGTCGTGGCCCTGTTCAAATTCTCACTCGACAACCGGCAGAAGGACGTTCTCGTGATGGAGGTCTACGTTTTGGAGAGATGGAACGTGATTGTATGATAGCCCATGGAGCTGCTxxxxxxxxxxxxxxxxxxCTCTTTGACCAAAGTGATGCATATAGGGTCCATGTTTGTGAACGCTGTGGTCTAATTGCTATT

Fln Alignment:

uagpf_mira_c6688___MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHxxxxRLFDQSDAYRVHVCERCGLIAI
D5ABJ4________________MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHxxxxRLFDQSDAYRVHVCERCGLIAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain