SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27553

Length: 392 nt

UniGene Fasta

>uagpf_v2_unigene27553
CGTCGTGACCTTGGCTGTCACTCAGAGGCTTTGGAACTGTATATAAAGGTTATGTAGATGAGAATGTCAGAGCAGGCCTCAAACCTCTGCCTGTTGCAGTGAAGGTTCTCAACAAAAATGGTTTTCAAGGCCACAGGGAATGGCTGACGGAAGTTATTTTTCTGGGACAGCTGAGTCATCCCCATTTGGTTAAACTGATAGGTTACTGTTGCGAGGATGACCATAGATTGCTGGTTTATGAGTTCATGTTTCGGGGCAGTCTCGAGAATCATCTATTTCGGAAGGCATCTGTTCCTTTGCCTTGGTCTACAAGGATGATGATTGCACTTGGGGCTGCGAAAGGGCTTGCTTTTCTTCATGGAGCAGAGAAACCAGTTATCTATAGAGATTTC

Ace file of the UniGene uagpf_v2_unigene27553

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5228	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] sp\|Q8GXZ3.1\|Y5102_ARATH RecName: Full=Serine/threonine-protein kinase At5g01020 dbj\|BAC42590.1\| putative protein kinase [Arabidopsis thaliana] gb\|AED90288.1\| protein kinase family protein [Arabidopsis t	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	serine threonine-protein kinase at5g01020-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKU3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 207 aas, your sequence is shorter than subject: 130 - 440

Fln protein: S*PWLSLRGFGTVYKGYVDENVRAGLKPLPVAVKVLNKNGFQGHREWLTEVIFLGQLSHPHLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKASVPLPWSTRMMIALGAAKGLAFLHGAEKPVIYRDF

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGGCTTTGGAACTGTATATAAAGGTTATGTAGATGAGAATGTCAGAGCAGGCCTCAAACCTCTGCCTGTTGCAGTGAAGGTTCTCAACAAAAATGGTTTTCAAGGCCACAGGGAATGGCTGACGGAAGTTATTTTTCTGGGACAGCTGAGTCATCCCCATTTGGTTAAACTGATAGGTTACTGTTGCGAGGATGACCATAGATTGCTGGTTTATGAGTTCATGTTTCGGGGCAGTCTCGAGAATCATCTATTTCGGAAGGCATCTGTTCCTTTGCCTTGGTCTACAAGGATGATGATTGCACTTGGGGCTGCGAAAGGGCTTGCTTTTCTTCATGGAGCAGAGAAACCAGTTATCTATAGAGATTTC

Fln Alignment:

uagpf_mira_c6522___GFGTVYKGYVDENVRAGLKPLPVAVKVLNKNGFQGHREWLTEVIFLGQLSHPHLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKASVPLPWSTRMMIALGAAKGLAFLHGAEKPVIYRDF
B8LKU3________________GFGTVYKGYIDENVRAGLKPLPVAVKVLNKNGFQGHREWLTEVIFLGQLSHPHLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKAAVPLPWSTRMMIALGAAKGLAFLHGAEKPVIYRDF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
78		80	20		0.995496
81	20		20		0.992567
82	80			20	0.995497
83	80		20		0.995497
84	80	20			0.995493
91		75	25		0.996473
98		25		75	0.996473
99			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain