SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27214

Length: 360 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene27214
CGTCGTGACCTTGGCTGTCACTGGTCCAGTCTCTGGTCAATGCTGGACACCAAACTCACTAAGTCCACAACCTTCCATCCTCAAACTGATGGCCAGACAGAGGTTGTCAATAGGATGATTGTACACATTCTGCGCATGTACAACTCAAAGCATCCACGCACATGGGACGAGAGCCTCCCCTATGTTCAGCACAGCTACAACCGAGCTCTTCACAGCTCGACTAGCCACAACCCCTTTCAGGTGGGCTTGGGATTCCAACCACTATGCCCCATTGATGTGGCCCTGCCACTTGCAACTACTCACACAGCTTCAGCTCATGTCCAGTCCGAAACAGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene27214 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8067	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	56%
Blast2go	gag-pol polyprotein	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	0.0	55%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2AA76

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 148 aas, your sequence is shorter than subject: 113 - 887

Fln protein: RRDLGCHWSSLWSMLDTKLTKSTTFHPQTDGQTEVVNRMIVHILRMYNSKHPRTWDESLPYVQHSYNRALHSSTSHNPFQVGLGFQPLCPIDVALPLATTHTASAHVQSETD*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTGGTCCAGTCTCTGGTCAATGCTGGACACCAAACTCACTAAGTCCACAACCTTCCATCCTCAAACTGATGGCCAGACAGAGGTTGTCAATAGGATGATTGTACACATTCTGCGCATGTACAACTCAAAGCATCCACGCACATGGGACGAGAGCCTCCCCTATGTTCAGCACAGCTACAACCGAGCTCTTCACAGCTCGACTAGCCACAACCCCTTTCAGGTGGGCTTGGGATTCCAACCACTATGCCCCATTGATGTGGCCCTGCCACTTGCAACTACTCACACAGCTTCAGCTCATGTCCAGTCCGAAACAGATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c5782___RRDLGCHWSSLWSMLDTKLTKSTTFHPQTDGQTEVVNRMIVHILRMYNSKHPRTWDESLPYVQHSYNRALHSSTSHNPFQVGLGFQPLCPIDVALPLATT
Q2AA76________________RRFLRHFWDSLWSLMDTRQKKSTIFHPQTDGQTEVVNRTIIYMLRGYNFKHPKIWDESLPYLQFVFNRAIHGSSGKSPFETCYGFLPSSPFDIVFSSEAT

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
135	25		75		0.996473
137		75		25	0.996476
138		50		50	1.0
142		75	25		0.996473
148	25		75		0.996473
160	25		75		0.996475
167	33		66		0.997452
173	25	75			0.996473
175	25		75		0.996473
191		75	25		0.996473
194	33		66		0.997452
205	25		75		0.996473
221	25		75		0.996473
229	25		75		0.996473
232	25		75		0.996473
239		25		75	0.996473
250			50	50	1.0
262		75		25	0.996473
263			50	50	1.0
264	25		75		0.996473
272	66			33	0.997452
276			75	25	0.996473
290	25		75		0.996474
292		50		50	1.0
294	25		75		0.996473
296	25		75		0.996474
302	75	25			0.996473
319	25		50	25	0.995534
329	25		75		0.996474
338		75		25	0.996475
339		75	25		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain