SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene27103

Length: 467 nt

UniGene Fasta

>uagpf_v2_unigene27103
CGTCGTGACCTTGGCTGTCACTCAATTTTATTCCTCGTCGTGACCTTGGCTGTCACTCTTTTTTCCGTGGCTTGCCCAATCATCTGTGGGCGCTTGACATTGCCGCACAAGTTGTTTTCTTGATAGACGTCTGTGTTCAGTTCTTTCTTTCCTACCGAGATTCACATACTTACAAGATGGTGTATGATCCCCCGAAAATTGCTGTTCGTTATGCAAAAACAAGTTTCATTCCGGATTTTCTTGGCTGCTTGCCCTGGGATATTATTTACAAATGTTCAGGCAGAAAAGAGAGGTAAGGTATCTGTTGTGGATCCGGTTGTATCGAGTGCGGAAATTGATCGAATTTTTTCAGAAAATGGAAAAAGATATCCGTATAAACTATTTGTTCACAAGGATTCTGAAACTTATCTCTGTGGAGCTGTATTGCACACATACTGCTGCTTGCATCTTTTATTATCTGGCCTCGC

Ace file of the UniGene uagpf_v2_unigene27103

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41472	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium channel GORK n=1 Tax=Arabidopsis thaliana RepID=GORK_ARATH	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	potassium channel skor	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	78%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	78%
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	outward rectifier potassium channel activity	GO:0015271	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL78

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 98 - 265

Fln protein: S*PWLSLNFIPRRDLGCHSFFRGLPNHLWALDIAAQVVFLIDVCVQFFLSYRDSHTYKMVYDPPKIAVRYAKTSFIPDFLGCLPWDIIYKCSGRKER*

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTATTCCTCGTCGTGACCTTGGCTGTCACTCTTTTTTCCGTGGCTTGCCCAATCATCTGTGGGCGCTTGACATTGCCGCACAAGTTGTTTTCTTGATAGACGTCTGTGTTCAGTTCTTTCTTTCCTACCGAGATTCACATACTTACAAGATGGTGTATGATCCCCCGAAAATTGCTGTTCGTTATGCAAAAACAAGTTTCATTCCGGATTTTCTTGGCTGCTTGCCCTGGGATATTATTTACAAATGTTCAGGCAGAAAAGAGAGGTAAGGTATCTGTTGTGGATCCGGTTGTATCGAGTGCGGAAATTGATCGAATTTTTTCAGAAAATGGAAAAAGATATCCGTATAAACTATTTGTTCACAAGGATTCTGAAACTTATCTCTGTGGAGCTGTATTGCACACATACTGCTGCTTGCATCTTTTATTATCTGGCCTCGC

Fln Alignment:

uagpf_mira_c5576___PNHLWALDIAAQVVFLIDVCVQFFLSYRDSHTYKMVYDPPKIAVRYAKTSFIPDFLGCLPW
B8LL78________________PGALFIADIVIDIFFAIDIVVTFFVAYVDDKTQQIEDNPKRIAVRYISTWFIFDITSTVPF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
37			66	33	0.997476
41			66	33	0.997476
43			66	33	0.997476
46	33	66			0.997476
61	33		33	33	0.997751

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain