SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene26906

Length: 355 nt

UniGene Fasta

>uagpf_v2_unigene26906
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAAATCGTAAAGGGAAATCTATGTGCTATATGTGAGCTTGCAGTTGTGTTCTGGGTCTTCAGATGCAGGTCAAGGGAAAGGAAGTTAAGGATGATACTGTTCAACAGAAAGAGCTTGCAGTTTATTTTAGTCATAGCAACCTTCAAAAATTCCATTTGAGGTTGGCTTTGCTGAATACCATGGGTGTTTGTTATAAAGGAGGGAGCTTCAGTACAGCAGCTAACTTTGCTTGATGATTTGGAAAGTGAACCCCTGCAAACCATTCAACAAAGGTACAAGTTCTGCAGGCATGCGAGAATCAGTTGCAGGA

Ace file of the UniGene uagpf_v2_unigene26906

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62420	1/4
SustainPine v2.0	sp_v2.0_unigene63752	3/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA	-	-	4.0e-20	59%
FL-Next	sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	coatomer subunit alpha-1-like	-	-	1.4863e-24	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.4863e-24	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.4863e-24	74%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94A40

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 70 aas, your sequence is shorter than subject: 117 - 1216

Fln protein: S*PWLSLRRDLGCHSNRKGKSMCYM*ACSCVLGLQMQVKGKEVKDDTVQQKELAVYFSHSNLQKFHLRLALLNTMGVCYKGGSFSTAANFA**FGK*TPANHSTKVQVLQACENQLQ

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAAATCGTAAAGGGAAATCTATGTGCTATATGTGAGCTTGCAGTTGTGTTCTGGGTCTTCAGATGCAGGTCAAGGGAAAGGAAGTTAAGGATGATACTGTTCAACAGAAAGAGCTTGCAGTTTATTTTAGTCATAGCAACCTTCAAAAATTCCATTTGAGGTTGGCTTTGCTGAATACCATGGGTGTTTGTTATAAAGGAGGGAGCTTCAGTACAGCAGCTAACTTTGCTTGATGATTTGGAAAGTGAACCCCTGCAAACCATTCAACAAAGGTACAAGTTCTGCAGGCATGCGAGAATCAGTTGCAGGA

Fln Alignment:

uagpf_mira_c5149___VLGLQMQVKGKEVKDDTVQQKELAVYFSHSNLQKFHLRLALLNTMGVCYKXXXXXXXXXXXXXXXK*TPANHSTKV--QVLQACENQL
Q94A40________________VLGLQMELKRREMKDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSPVDSQAKMARQVVQAAERNM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
262	33		66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain