SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene26901

Length: 435 nt

UniGene Fasta

>uagpf_v2_unigene26901
CGTCGTGACCTTGGCTGTCACTCAGAGTTGGGTATCCGGCATATGAGGAGACCTGCCCGAGATTTTGACCCAGACTCTTTGAGAAAGGAGTTACCAAAGGCAGTTTCTTCTTTAGATTGGGCCATTTCAAAAGGGGGCACTGTATATGTCCACTGCACAGCAGGGTTGGGAAGGGCACCGGCTGTAGCAATTGCTTGTCTCTTCTGGTTCTGTGATATGGATTTGAATAAGGCATATGATATGGTGACATCAAAAAGACCTTGTGGACCAAAGAGAGATGCAATTAGAGGTGCCACGTATGATCTGGCAAAAAATGATCCGTGGAAGGCATCCTTTGAGAGTCTTCCTGATTATGCTTTCACAGGTGTTGCAGATTGGGAAAGGAAGCTAATTCAAGACAGAGTTGTCGGTCTTCGTTGATGATATAGAATTTCA

Ace file of the UniGene uagpf_v2_unigene26901

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene879	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Dual specificity protein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9S4C7_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	dual-specificity phosphatase 3	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-tyrosine dephosphorylation	GO:0035335	Biological Process	83%
Blast2go	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	83%
Blast2go	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	0.0	-
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD05

Fln msg: your sequence is shorter than subject: 140 - 287

Fln protein: RRDLGCHSELGIRHMRRPARDFDPDSLRKELPKAVSSLDWAISKGGTVYVHCTAGLGRAPAVAIACLFWFCDMDLNKAYDMVTSKRPCGPKRDAIRGATYDLAKNDPWKASFESLPDYAFTGVADWERKLIQDRVVGLR*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTTGGGTATCCGGCATATGAGGAGACCTGCCCGAGATTTTGACCCAGACTCTTTGAGAAAGGAGTTACCAAAGGCAGTTTCTTCTTTAGATTGGGCCATTTCAAAAGGGGGCACTGTATATGTCCACTGCACAGCAGGGTTGGGAAGGGCACCGGCTGTAGCAATTGCTTGTCTCTTCTGGTTCTGTGATATGGATTTGAATAAGGCATATGATATGGTGACATCAAAAAGACCTTGTGGACCAAAGAGAGATGCAATTAGAGGTGCCACGTATGATCTGGCAAAAAATGATCCGTGGAAGGCATCCTTTGAGAGTCTTCCTGATTATGCTTTCACAGGTGTTGCAGATTGGGAAAGGAAGCTAATTCAAGACAGAGTTGTCGGTCTTCGTTGA___TGATATAGAATTTCA

Fln Alignment:

uagpf_mira_c5137___ELGIRHMRRPARDFDPDSLRKELPKAVSSLDWAISKGGTVYVHCTAGLGRAPAVAIACLFWFCDMDLNKAYDMVTSKRPCGPKRDAIRGATYDLAKNDPWKASFESLPDYAFTGVADWERKLIQDRVVGLR
D5AD05________________ELGIRHMRRPARDFDPDSLRKELPKAVSSLDWAISKGGTVYVHCTAGLGRAPAVAIAYLFWFCDMDLNKAYDMVTSKRPCGPKRNAIRGATYDLAKNEPWKASFESLPDYAFTGVADWERKLIQDRVVGLR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
196		25		75	0.996477
197	50		50		1.0
201	33			66	0.997452
202		75	25		0.996476
203	25			50	0.995533
204		25		75	0.996477
206	33			66	0.997452
207			66	33	0.997452
210			33	66	0.997452
215		33	66		0.997452
219	66	33			0.997452
220	33			66	0.997452
225		33		66	0.997452
227	25		75		0.996481
243	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain