SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene26373

Length: 248 nt

UniGene Fasta

>uagpf_v2_unigene26373
AAAGTTTGTTAAATCGTTTATAATTTGAAAGTTAGATATAATTTGTAATTTTGTTGAGCTAACTCATTACACTCCTATGTTTTTGCAGCACAATGGTGGGAGGCCTTTGGTGGCCATTGTCCTGAATTGCAAAGGTTTGCAATTCGTATTTTGAGTCAAACTTGCAGTGCATCTGGGTGTGAGCGCAATTGGTCTGTCTTTGAGAGGATTCACACAAAGAAGAGAGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene26373

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28633	1/3
SustainPine v2.0	sp_v2.0_unigene33918	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dimer_Tnp_hAT domain containing protein	-	-	8.0e-11	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	unknown [Picea sitchensis]	-	-	1.02347e-36	74%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADK7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 122 aas, your sequence is shorter than subject: 77 - 250

Fln protein: KVC*IVYNLKVRYNL*FC*ANSLHSYVFAAQWWEAFGGHCPELQRFAIRILSQTCSASGCERNWSVFERIHTKKRE*

Protein Length: 78

Fln nts: AAAGTTTGTTAAATCGTTTATAATTTGAAAGTTAGATATAATTTGTAATTTTGTTGAGCTAACTCATTACACTCCTATGTTTTTGCAGCACAATGGTGGGAGGCCTTTGGTGGCCATTGTCCTGAATTGCAAAGGTTTGCAATTCGTATTTTGAGTCAAACTTGCAGTGCATCTGGGTGTGAGCGCAATTGGTCTGTCTTTGAGAGGATTCACACAAAGAAGAGAGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c4007___AQWWEAFGGHCPELQRFAIRILSQTCSASGCERNWSVFERIHTKKR
D5ADK7________________AYWWQQFGSQCHELHKFAVRILSQTCSAFGCERNWSVFERIHTKKR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
117			33	66	0.997452
120		33		66	0.997452
122		66		33	0.997452
159	66		33		0.997452
171	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain