SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene26363

Length: 521 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene26363
TTTTCCGGCTTCTGTTGGACTGTTGACTCAGTTGACTCATTTGACAGTTAGGGGATGCCCCATAAGACCCCGTAAAGGACTTGAACATTGGAGGTCCTTGGAGGGGTTGACCTTAGGTCAATGTGTGAAGCTAAAGAACATAACAGGGTTGGCCCAGTGCACAAAGCTTCGCAGCCTTTGGCTTCATGAGTGCGCTGAGTTAGAGGACTTGGAAGGTGTTGAACATTGTACGTCTTTACGTAGGCTCGATGTCAGCAGTTGTCCCAAGCTCCAGTTGGGTGGGGGAGTAATGGAGCAGCTGCAGCAACGATTGAAAGGGGGACTCTCTTTCGAATTATGAAAGGGGGATTCTTGTTTCGCATTGAATAGCAATGTGAAAAAACAGTTTTGCAATGAAATCATTACCATCAGTCTTCCAAGAGTGGCCATTAGCGATAATGAGCAGCTACATGTGTATATTTTATGGCCTTCCCAGATTTGCACTAATTACAACGAGTTGATTATTATCGTTAGTTATTCAA

Ace file of the UniGene uagpf_v2_unigene26363 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12666	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	protein	-	-	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A987

Fln msg: your sequence is shorter than subject: 113 - 158

Fln protein: FPASVGLLTQLTHLTVRGCPIRPRKGLEHWRSLEGLTLGQCVKLKNITGLAQCTKLRSLWLHECAELEDLEGVEHCTSLRRLDVSSCPKLQLGGGVMEQLQQRLKGGLSFEL*

Protein Length: 114

Fln nts: TTTTCCGGCTTCTGTTGGACTGTTGACTCAGTTGACTCATTTGACAGTTAGGGGATGCCCCATAAGACCCCGTAAAGGACTTGAACATTGGAGGTCCTTGGAGGGGTTGACCTTAGGTCAATGTGTGAAGCTAAAGAACATAACAGGGTTGGCCCAGTGCACAAAGCTTCGCAGCCTTTGGCTTCATGAGTGCGCTGAGTTAGAGGACTTGGAAGGTGTTGAACATTGTACGTCTTTACGTAGGCTCGATGTCAGCAGTTGTCCCAAGCTCCAGTTGGGTGGGGGAGTAATGGAGCAGCTGCAGCAACGATTGAAAGGGGGACTCTCTTTCGAATTATGA___AAGGGGGATTCTTGTTTCGCATTGAATAGCAATGTGAAAAAACAGTTTTGCAATGAAATCATTACCATCAGTCTTCCAAGAGTGGCCATTAGCGATAATGAGCAGCTACATGTGTATATTTTATGGCCTTCCCAGATTTGCACTAATTACAACGAGTTGATTATTATCGTTAGTTATTCAA

Fln Alignment:

uagpf_mira_c3990___PASVGLLTQLTHLTVRGCPIRPRKGL-----------------------EHWRSLEGLTLGQCVKLKNITGLAQCTKLRSLWLHECAELEDLEGVEHCTSLRRLDVSSCPKLQLGGGVMEQLQQRLK
D5A987________________PDSIGLLTQLTHMKVKDCNLRKIEGLCGLAKLEILKIQSSEELEELPSMETLVSLRGLWAYGCVKLKRIKGLALLTKLRVLDVKNCSELKELEGVEHCISLQRLYASGCPKLQWGGGA-GQLRQRLK

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
241		80		20	0.9955
242		80	20		0.9955
244		80	20		0.995493
245		80		20	0.995493
246		80	20		0.995493
250		80	20		0.995493
251		20		80	0.995493
252		20	80		0.995493
253	20		80		0.995493
256		80	20		0.995493
258		20		80	0.995493
259	20		80		0.995493
260		20	80		0.995493
264	80		20		0.995493
426		75		25	0.996474
427		75	25		0.996473
429	75		25		0.996473
430			75	25	0.996473
433		75		25	0.996473
434	25	50	25		0.995535
435	25		25	50	0.995533
436		75	25		0.996473
437		75		25	0.996473
438	75		25		0.996473
440		25		50	0.995533
441	25		75		0.996473
442			50	50	1.0
443		25		75	0.996473
446	75	25			0.996473
448	25		25	50	0.995534
449		75		25	0.996473
450		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain