SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene26151

Length: 492 nt

UniGene Fasta

>uagpf_v2_unigene26151
CGTCGTGACCTTGGCTGTCACTCATTTAGAGAATGTATACAGCCGTTGTTCTGCTATTGCTTCGATATGGGTTTATGGCAATAGCTTCGGATCTTTTCTTGTGGCAATTGTTATACCTGATCAGAAGGCACTTGAAAACTGGGCTGCTACCAATGAGGTAACAGGGAATTTTGAATCTTTGTGCGAAAATCAGAAGGCAAAGCAATACATCCTACACGAGCTCAATGCAACTGGGAAAAATCACAAGCTCAAGGGTTTCGAGATGCTGAAAGGTATTCACCTTGAACTTAAGCCATTTGATGTGGAAAGGGACCTGATCACTCCAACATTTAAATTGAAGCGACCTCAATTACTGAAGTACTACAAGGACATCATTGATGACCTGTACAAGACCTCCAAGTAAACCACAGAGGCACAAGACGACTGTGTGTAAATAGGAGTTCATCATATTACACCATGACCATCCCATATAGTTGTCGCTTATCTTTTAGA

Ace file of the UniGene uagpf_v2_unigene26151

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4338	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	long-chain acyl-CoA synthetase 2 [Arabidopsis thaliana] sp\|Q9XIA9.1\|LACS2_ARATH RecName: Full=Long chain acyl-CoA synthetase 2; AltName: Full=Protein Botrytis resistant 1; AltName: Full=Protein LATERAL ROOT DEVELOPMENT 2 gb\|AAD43157.1\|AC007504_12 Putative	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	long chain acyl- synthetase 2-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	84%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	84%
Blast2go	lateral root formation	GO:0010311	Biological Process	84%
Blast2go	defense response to fungus	GO:0050832	Biological Process	84%
Blast2go	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	84%
Blast2go	very long-chain fatty acid-CoA ligase activity	GO:0031957	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACR7

Fln msg: your sequence is shorter than subject: 134 - 197

Fln protein: VVTLAVTHLENVYSRCSAIASIWVYGNSFGSFLVAIVIPDQKALENWAATNEVTGNFESLCENQKAKQYILHELNATGKNHKLKGFEMLKGIHLELKPFDVERDLITPTFKLKRPQLLKYYKDIIDDLYKTSK*

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAGAGAATGTATACAGCCGTTGTTCTGCTATTGCTTCGATATGGGTTTATGGCAATAGCTTCGGATCTTTTCTTGTGGCAATTGTTATACCTGATCAGAAGGCACTTGAAAACTGGGCTGCTACCAATGAGGTAACAGGGAATTTTGAATCTTTGTGCGAAAATCAGAAGGCAAAGCAATACATCCTACACGAGCTCAATGCAACTGGGAAAAATCACAAGCTCAAGGGTTTCGAGATGCTGAAAGGTATTCACCTTGAACTTAAGCCATTTGATGTGGAAAGGGACCTGATCACTCCAACATTTAAATTGAAGCGACCTCAATTACTGAAGTACTACAAGGACATCATTGATGACCTGTACAAGACCTCCAAGTAA___ACCACAGAGGCACAAGACGACTGTGTGTAAATAGGAGTTCATCATATTACACCATGACCATCCCATATAGTTGTCGCTTATCTTTTAGA

Fln Alignment:

uagpf_mira_c3522___LENVYSRCSAIASIWVYGNSFGSFLVAIVIPDQKALENWAATNEVT-GNFESLCENQKAKQYILHELNATGKNHKLKGFEMLKGIHLELKPFDVERDLITPTFKLKRPQLLKYYKDIIDDLY
D5ACR7________________VEAALSVCHYLDNFMLHADPFHSYCVALVVPSRQALESWAQKEGIIYKDFSDLCQKSEAIKEVQSSILEVGKSAKLDKFEIPSKIKLLPDPWTPETGLVTAALKLKREVIKKTFAEELNKLY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
100			14	14	0.984337
101			14	57	1.0
102		14		85	0.993536
103		16	83		0.994512
104	16			83	0.994512
105		42	57		1.0
106	42		42	14	1.0
109	50	50			1.0
110	83			16	0.994512
112			16	83	0.994512
114		16		83	0.994512
116	83		16		0.994512
121		83		16	0.994512
122		16		83	0.994512
123	16		83		0.994512
138	14		85		0.993535
352		80		20	0.995493
355	80		20		0.995493
356	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain