SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene26103

Length: 569 nt

UniGene Fasta

>uagpf_v2_unigene26103
CGTCGTGACCTTGGCTGTCACTCAATTATCGGAAATCACCCGAGGACTGCCGGAGATCAGGTGTTTCTGCAATGCACCGTGTGGGCAGTACAGGGAATACTTCAAATTCGTCCCGTCCTCGAAGAGAAAAGCGGTTAACTTATGTGTTAAATGATGCAAATGATTCCAGACATTGTTCAGGGATAAACTGCTTGGTGATATCAAAGTTATCTTTGCTTGGTGGCAATGACTATTTGTTCAGTGGTAGTCGAGATGGAACACTCAAACGATGGGAGTTGGCTGATGATTCTGCTGTCTGCAGTGCAACATTTGAATCTCATGTTGACTGGGTAAATGATGTGGTCCTCACAGGCGAGACACTTGTTTCTTGTTCTTCAGACACTACTCTCAAGACCTGGCGTCCTTTCTCTGATGGTGTCTGCACCAGAACTCTTCGTCAACATTCTGATTATGTTACATGCCTTGCAGCGGCATCAAAAAATGCAATATTGTTGCTTCAGGAGGTCTTGGTCGTGAAGTGTTCATATGGGATATTGAAGCAGCAATGGCTCCAGTCTCACGGACTAGTG

Ace file of the UniGene uagpf_v2_unigene26103

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13875	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] ref\|NP_850516.1\| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAL07141.1\| unknown protein [Arabidopsis thaliana] gb\|AAM83246.1\| AT3g05090/T12H1_5 [Arabidopsis thalia	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	wd repeat-containing protein 48-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	lateral root formation	GO:0010311	Biological Process	81%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	81%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	81%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPG9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 189 - 370

Fln protein: S*PWLSLNYRKSPEDCRRSGVSAMHRVGSTGNTSNSSRPRREKRLTYVLNDANDSRHCSGINCLVISKLSLLGGNDYLFSGSRDGTLKRWELADDSAVCSATFESHVDWVNDVVLTGETLVSCSSDTTLKTWRPFSDGVCTRTLRQHSDYVTCLAAASKNAILLLQEVLVVKCSYGILKQQWLQSHGLV

Protein Length: 190

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATCGGAAATCACCCGAGGACTGCCGGAGATCAGGTGTTTCTGCAATGCACCGTGTGGGCAGTACAGGGAATACTTCAAATTCGTCCCGTCCTCGAAGAGAAAAGCGGTTAACTTATGTGTTAAATGATGCAAATGATTCCAGACATTGTTCAGGGATAAACTGCTTGGTGATATCAAAGTTATCTTTGCTTGGTGGCAATGACTATTTGTTCAGTGGTAGTCGAGATGGAACACTCAAACGATGGGAGTTGGCTGATGATTCTGCTGTCTGCAGTGCAACATTTGAATCTCATGTTGACTGGGTAAATGATGTGGTCCTCACAGGCGAGACACTTGTTTCTTGTTCTTCAGACACTACTCTCAAGACCTGGCGTCCTTTCTCTGATGGTGTCTGCACCAGAACTCTTCGTCAACATTCTGATTATGTTACATGCCTTGCAGCGGCATCAAAAAATGCAATATTGTTGCTTCAGGAGGTCTTGGTCGTGAAGTGTTCATATGGGATATTGAAGCAGCAATGGCTCCAGTCTCACGGACTAGTG

Fln Alignment:

uagpf_mira_c3397___LSLLGGNDYLFSGSRDGTLKRWELADDSAVCSATFESHVDWVNDVVLTGETLVSCSSDTTLKTWRPFSDGVCTRTL---RQHSDYVTC
B8LPG9________________VSLASGADRLYSGSMDHTIRVWDL--ETFQCIQTLRDHTSVVMSLLLWDQFLLSCSLDNTVKVWAATSSGALEVTYTHNEQHGVLALC

SNPs (tot: 3)

Position	A %	C %	G %	Probability
244		33	66	0.997458
247	66	33		0.997458
254		33	66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain