SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25870

Length: 384 nt

UniGene Fasta

>uagpf_v2_unigene25870
CGTCGTGACCTTGGCTGTCACTCTTTTCACGAATTTATGTGAGCTGCAGACAAGATACAGGAAATCGGCGAGTTGAAAGAAAATTAGATCTGACAGACACACTTAAGGATGGTGCTCGAGTGGTAATAGTAGATGCTAGTATTCGGCGTAAACTTCTTTTGGCTTTGACTGAAGATTCTAAATTGCACGTTCAGGAGCTTATGGATATTTACAGATTAGTTGAAGGGGAATTTGATATTCCTTCCTTGGCTTTAGATCTTGTTCAAAGACTCCCAGTTGCTACACGAGATATGATGCTCGCTTGGAGTGAATCTGTCCTTGTAGATCGTTGAGAATGGCTTTCAAATGCTACTTAAAAATTTATTGTCATGCAGGTACCTTTTG

Ace file of the UniGene uagpf_v2_unigene25870

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28798	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted unusual protein kinase (ISS) [Ostreococcus tauri] emb\|CAL50461.1\| Predicted unusual protein kinase (ISS) [Ostreococcus tauri]	-	-	64%
FL-Next	Isoform 2 of Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390	-	-	68%
Blast2go	uncharacterized aarf domain-containing protein kinase chloroplastic-like	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RWG1-2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 110 - 657

Fln protein: S*PWLSLFSRIYVSCRQDTGNRRVERKLDLTDTLKDGARVVIVDASIRRKLLLALTEDSKLHVQELMDIYRLVEGEFDIPSLALDLVQRLPVATRDMMLAWSESVLVDR*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCTTTTCACGAATTTATGTGAGCTGCAGACAAGATACAGGAAATCGGCGAGTTGAAAGAAAATTAGATCTGACAGACACACTTAAGGATGGTGCTCGAGTGGTAATAGTAGATGCTAGTATTCGGCGTAAACTTCTTTTGGCTTTGACTGAAGATTCTAAATTGCACGTTCAGGAGCTTATGGATATTTACAGATTAGTTGAAGGGGAATTTGATATTCCTTCCTTGGCTTTAGATCTTGTTCAAAGACTCCCAGTTGCTACACGAGATATGATGCTCGCTTGGAGTGAATCTGTCCTTGTAGATCGTTGA___GAATGGCTTTCAAATGCTACTTAAAAATTTATTGTCATGCAGGTACCTTTTG

Fln Alignment:

uagpf_mira_c2842___RRVERKLDLTDTLKDGARVVIVDASIRRKLLLALTEDSKLHVQELMDIYRLVEGEFDIPSLALDLVQRLPVATRDMMLAWSESVLVDR
Q8RWG1-2______________KRVESKLDLTDTIKDGARLFLLDEGIRRKLILALTEDSKLHVEELVDVYRLVEDEVDIPTLAMQVVQDLPNVFRDFVLSWSNSVLSDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain