SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25756

Length: 300 nt

UniGene Fasta

>uagpf_v2_unigene25756
TATACATATCTGTATGCGTAAAGCCTGTCTGCGGGTGGATTTCTTCGGTTTTTCTTTTATTCTCGCTGATTAGAGGGTTTGAGTCATTCGCCCAGAGACAATTGTATCTTGGAGCCCAGCAGCTTGGGATGCGGGTTAGATCAGGCCTCACAATTCTTGTATACAGAAAGGGCTTGCGTCTGTCTAACATATCTAGACAGAAGCATACTGTTGGTGAAATCATAAATTATATGAGTGTGGATGTGGAAGCATTGGAGCTTTTGCCTGTTTTGTGTATGGTCTGTTCTTCTGTCTAGTTCA

Ace file of the UniGene uagpf_v2_unigene25756

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36827	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily C, member 9, group MRP protein PpABCC9 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TG36_PHYPA	-	-	1.0e-14	58%
FL-Next	sp=ABC transporter C family member 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	abc transporter c family member 5	-	-	4.17654e-17	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	4.17654e-17	71%
Blast2go	cellular potassium ion homeostasis	GO:0030007	Biological Process	4.17654e-17	71%
Blast2go	sulfonylurea receptor activity	GO:0008281	Molecular Function	4.17654e-17	71%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	4.17654e-17	71%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	4.17654e-17	71%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7GB25

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1083 aas, your sequence is shorter than subject: 98 - 1514

Fln protein: YISVCVKPVCGWISSVFLLFSLIRGFESFAQRQLYLGAQQLGMRVRSGLTILVYRKGLRLSNISRQKHTVGEIINYMSVDVEALELLPVLCMVCSSV*

Protein Length: 99

Fln nts: TATACATATCTGTATGCGTAAAGCCTGTCTGCGGGTGGATTTCTTCGGTTTTTCTTTTATTCTCGCTGATTAGAGGGTTTGAGTCATTCGCCCAGAGACAATTGTATCTTGGAGCCCAGCAGCTTGGGATGCGGGTTAGATCAGGCCTCACAATTCTTGTATACAGAAAGGGCTTGCGTCTGTCTAACATATCTAGACAGAAGCATACTGTTGGTGAAATCATAAATTATATGAGTGTGGATGTGGAAGCATTGGAGCTTTTGCCTGTTTTGTGTATGGTCTGTTCTTCTGTCTAGTTCA

Fln Alignment:

uagpf_mira_c2567___ISSVFLLFSLIRGFESFAQRQLYLGAQQLGMRVRSGLTILVYRKGLRLSNISRQKHTVGEIINYMSVDVEAL
Q7GB25________________LAGIFFTSKLI---ETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
65			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain