SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25711

Length: 209 nt

UniGene Fasta

>uagpf_v2_unigene25711
CGTCGTGACCTTGGCTGTCACTACAAGTACAGGAATGGAGAAAGGGTTCTCAGTGGTTCACAGTGAAAAGACAGCATGCATTGCTCATAGTGGCAGATTATGTTTATTACTCAAAGTTCAAACAAATATGCAGGCCAGGTGTTGAGACACATAACTGCTATCCTGATGAGCACTATGTGCAGACCTTTCTCCATATGATGGATCCTTCT

Ace file of the UniGene uagpf_v2_unigene25711

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25585	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] ref\|NP_194863.4\| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] dbj\|BAC43211.1\| unknown protein [Arabidops	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Polymerase/histidinol phosphatase, N-terminal	IPR003141	-	-
Sma3	Glycosyl transferase, family 14	IPR003406	-	-
Sma3	Adaptor protein ClpS, core	IPR003769	-	-
Sma3	PHP, C-terminal	IPR004013	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	DNA polymerase III, alpha subunit	IPR004805	-	-
Sma3		IPR004949	-	-
Sma3	ATPase, AFG1-like	IPR005654	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	Bacterial DNA polymerase III, alpha subunit	IPR011708	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV28

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 91 aas, your sequence is shorter than subject: 69 - 408

Fln protein: S*PWLSLQVQEWRKGSQWFTVKRQHALLIVADYVYYSKFKQICRPGVETHNCYPDEHYVQTFLHMMDPS

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTACAAGTACAGGAATGGAGAAAGGGTTCTCAGTGGTTCACAGTGAAAAGACAGCATGCATTGCTCATAGTGGCAGATTATGTTTATTACTCAAAGTTCAAACAAATATGCAGGCCAGGTGTTGAGACACATAACTGCTATCCTGATGAGCACTATGTGCAGACCTTTCTCCATATGATGGATCCTTCT

Fln Alignment:

uagpf_mira_c2456___LQVQEWRKGSQWFTVKRQHALLIVADYVYYSKFKQICRPGVETHNCYPDEHYVQTFLHMMDPS
A9NV28________________IRVEEWRKGSQWFTVKRQHALLLIADYVYYSKFKQICRSGAETHNCYPDEHYVQTFLHMIDPS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
23	66	33			0.997454
24	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain