SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25574

Length: 262 nt

UniGene Fasta

>uagpf_v2_unigene25574
CGTCGTGACCTTGGCTGTCACTCAGTATTCTAGGGTTCCGTCCTTCCCATGGGACTGTTTCCACCATTGGTGTTGTGCCAATGGCTCAGAGTTTTGATACTGTTGGTTTGTTTACAAGGGATCCAAATATTTTGCGTCATGTTGGTCATATACTACTACAGTTGCCATTCATGGAGTACAGGCAACCAAGGCGTATTATAATTGCAGATGATTGCTTTCAGGTTACAGATATTCCTAATGATCGAACAGTGAATGTAGTCAC

Ace file of the UniGene uagpf_v2_unigene25574

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16482	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pfam01425, Amidase, Amidase	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	amidase family protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	77%
Blast2go	integral to chloroplast outer membrane	GO:0031359	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 205 aas, your sequence is shorter than subject: 86 - 458

Fln protein: S*PWLSLSILGFRPSHGTVSTIGVVPMAQSFDTVGLFTRDPNILRHVGHILLQLPFMEYRQPRRIIIADDCFQVTDIPNDRTVNVV

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTCTAGGGTTCCGTCCTTCCCATGGGACTGTTTCCACCATTGGTGTTGTGCCAATGGCTCAGAGTTTTGATACTGTTGGTTTGTTTACAAGGGATCCAAATATTTTGCGTCATGTTGGTCATATACTACTACAGTTGCCATTCATGGAGTACAGGCAACCAAGGCGTATTATAATTGCAGATGATTGCTTTCAGGTTACAGATATTCCTAATGATCGAACAGTGAATGTAGTCAC

Fln Alignment:

uagpf_mira_c2146___ILGFRPSHGTVSTIGVVPMAQSFDTVGLFTRDPNILRHVGHILLQLPFMEYRQPRRIIIADDCFQVTDIPNDRTVNVV
C0PSB6________________ILGFRPSHGAVSTVGVVPMAQSFDTVGLFTRDPNILRHVGHILLQLPFMEYRQPRGIIIADDCFQLTKIPNDQTVNVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain