SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25444

Length: 408 nt

UniGene Fasta

>uagpf_v2_unigene25444
CGTCGTGACCTTGGCTGTCACTCATTTTTGCGGAAGCTGCAGACTTGGGAGGAGCGAAATGAAATACTTCTGACGTCTTTATTTATTTACCTGAAACTCCGGCCTTGGCTTTAACTAGGTAGATTTTGGGGGCGGGGTTGGATTAGCAGTAGCGATGAATTCATCCTCGTCTTCATCTTCGGTGAAGGATGCCTCTGTCCTGCAGCTGGCCATGGCGGCCTTGCTGGGGGCCTCCGTGATGGCTGTCTCTGCCTTTTACATTCACAAACGGAGCGTTGATCAGGTCCTCAAACAGACTCTGAACTCCCGCAGGCAGAAATCGACAGCCGACGAGGATGGAACCCTCGACAGCGACCCCGACGAATATGAAGATAACAACTCGTATTACAGACACAGAAGCCGCTTCGC

Ace file of the UniGene uagpf_v2_unigene25444

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14119	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	AMP deaminase [Arabidopsis thaliana] ref\|NP_850294.1\| AMP deaminase [Arabidopsis thaliana] sp\|O80452.2\|AMPD_ARATH RecName: Full=AMP deaminase; Short=AtAMPD; AltName: Full=Protein EMBRYONIC FACTOR 1 gb\|AAL07150.1\| putative AMP deaminase [Arabidopsis thalia	-	-	77%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	50%
Blast2go	amp deaminase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	AMP deaminase.	EC:3.5.4.6	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	82%
Blast2go	Biosynthesis of plant hormones	01070	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	82%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	AMP deaminase activity	GO:0003876	Molecular Function	82%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	microsome	GO:0005792	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AMP deaminase	IPR006329	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9HMV0

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 84 - 230

Fln protein: MNSSSSSSSVKDASVLQLAMAALLGASVMAVSAFYIHKRSVDQVLKQTLNSRRQKSTADEDGTLDSDPDEYEDNNSYYRHRSRF

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGCGGAAGCTGCAGACTTGGGAGGAGCGAAATGAAATACTTCTGACGTCTTTATTTATTTACCTGAAACTCCGGCCTTGGCTTTAACTAGGTAGATTTTGGGGGCGGGGTTGGATTAGCAGTAGCG_-_ATGAATTCATCCTCGTCTTCATCTTCGGTGAAGGATGCCTCTGTCCTGCAGCTGGCCATGGCGGCCTTGCTGGGGGCCTCCGTGATGGCTGTCTCTGCCTTTTACATTCACAAACGGAGCGTTGATCAGGTCCTCAAACAGACTCTGAACTCCCGCAGGCAGAAATCGACAGCCGACGAGGATGGAACCCTCGACAGCGACCCCGACGAATATGAAGATAACAACTCGTATTACAGACACAGAAGCCGCTTCGC

Fln Alignment:

uagpf_mira_c1751___ASVLQLAMAALLGASVMAVSAFYIHKRSVDQVLKQTLNSRRQKSTADED----GTLDSDPDEYEDNNS
B9HMV0________________SSSLQLAMAALVGASLMAISAFFIHKRSVDQVLDRLITIRRNSLLKEKEKETVAVDDKNHDEDEEHGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain