SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25335

Length: 532 nt

UniGene Fasta

>uagpf_v2_unigene25335
CGTCGTGACCTTGGCTGTCACTCAGTATATATCGTCGTGTCCTTGGGTTTCATTGGAGAAGATAATGAAGCCAAAAACTTTAAGTACAGCCTCGAGGTTGGAGGCAGTGGTCGGAAACTGACATGGCAGGGGGTTCCTCGTAGTATCAGAGATAGTCACAGGAAAGTTCGTGAGAGTCATGATGGACTCATCATACAAAGAAATATGGCACTATTTTTCTCAGGCAGTGACAGAAAAGAATTGAAGCTTAGACTGACAGGGCGCATATGGAAGGAACAATAATTATATGGACCTTTTGAAGATCTCGACTAAGACAAATAAGTTATATCTGCTGTTTGATTTGTTTGTCTCTTGCTGTTGAGTTCATTACAAAGGTTCTGATCCTTTCAATAAGCAAGCTGTCATTGTTAGAGATTCAAGAGAGAAATCATATCTAGAAAGTGTATTGGTCGACCACAGTGCAAGTTCTATGCGCATTTTCTCATGTAAAGACGTTCTTATAATTTCTAAACAATGGTAATTTAACTGGATT

Ace file of the UniGene uagpf_v2_unigene25335

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9411	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	pfam03145, Sina, Seven in absentia protein family	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	ubiquitin ligase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	88%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	88%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	88%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX30

Fln msg: your sequence is shorter than subject: 94 - 323

Fln protein: RRDLGCHSVYIVVSLGFIGEDNEAKNFKYSLEVGGSGRKLTWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGSDRKELKLRLTGRIWKEQ*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATATATCGTCGTGTCCTTGGGTTTCATTGGAGAAGATAATGAAGCCAAAAACTTTAAGTACAGCCTCGAGGTTGGAGGCAGTGGTCGGAAACTGACATGGCAGGGGGTTCCTCGTAGTATCAGAGATAGTCACAGGAAAGTTCGTGAGAGTCATGATGGACTCATCATACAAAGAAATATGGCACTATTTTTCTCAGGCAGTGACAGAAAAGAATTGAAGCTTAGACTGACAGGGCGCATATGGAAGGAACAATAA___TTATATGGACCTTTTGAAGATCTCGACTAAGACAAATAAGTTATATCTGCTGTTTGATTTGTTTGTCTCTTGCTGTTGAGTTCATTACAAAGGTTCTGATCCTTTCAATAAGCAAGCTGTCATTGTTAGAGATTCAAGAGAGAAATCATATCTAGAAAGTGTATTGGTCGACCACAGTGCAAGTTCTATGCGCATTTTCTCATGTAAAGACGTTCTTATAATTTCTAAACAATGGTAATTTAACTGGATT

Fln Alignment:

uagpf_mira_c1420___LGCHSVYIVVSLGFIGEDNEAKNFKYSLEVGGSGRKLTWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGSDRKELKLRLTGRIWKEQ
A9NX30________________LGMAPVYMAF-LRFMGDDNEAKNFSYSLEVGANGRKMIWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
129	80		20		0.995497
130		25	50	25	0.995533
131		20	60	20	0.992609
132		20	80		0.995505
133	25		50	25	0.995533
135	20			80	0.995498
136		20		80	0.995498
138		80		20	0.995497
140		75	25		0.996473
142		25		75	0.996473
143	75			25	0.996473
146	75	25			0.996473
147	25			75	0.996473
149	75			25	0.996473
150		25	75		0.996473
162	50		50		1.0
180	90		10		0.903229
182		10	90		0.903229
183	90		10		0.903229
186	10		90		0.903229
187	90	10			0.903229
190		88		11	0.923564
191	88		11		0.923564
192			11	88	0.923564
196	88		11		0.923564
197		88		11	0.923564
198	88	11			0.923564
200	88	11			0.923564
201			88	11	0.923564
202	88	11			0.923564
302		50	50		1.0
333	50	50			1.0
482	33	33			0.997743
483		66		33	0.997454
508			33	66	0.997452
509		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain