SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene25322

Length: 334 nt

UniGene Fasta

>uagpf_v2_unigene25322
CGTCGTGACCTTGGCTGTCACTCATGTTTAACAGGGACTCTTCGGCTAGAAAGTGGTGTGGATTGCTTACGTGAATTTCCGACTCTCCTTGTTGGGTTCAAGATCATGGGAATTGGTCTATCAGGCTTGAAAATAGATAAATTGGACCTCCAAAATGTGGTCTATCGTCCATATAAAGGATTTCGTGCTGTAACCCGAGCGGGAAACTATGAAATAAGGACGTGAAGATGGATTTGACAATGCAATTTAGTTGATGGCCAGGTTGCTTCGGCATCCCACTCTGCCTTGAGCGTAACAGATTGAGAATTAAAATCCCGTAAGAGGTAAATTGGAA

Ace file of the UniGene uagpf_v2_unigene25322

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10370	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	clathrin adaptor complexes medium subunit-like protein [Arabidopsis thaliana] gb\|AEE33412.1\| clathrin adaptor complexes medium subunit-like protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	71%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	copper ion transmembrane transport	GO:0035434	Biological Process	85%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	85%
Blast2go	zinc ion transmembrane transport	GO:0071577	Biological Process	85%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	85%
Blast2go	gravitropism	GO:0009630	Biological Process	85%
Blast2go	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	85%
Blast2go	clathrin vesicle coat	GO:0030125	Cellular Component	85%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin adaptor, mu subunit	IPR001392	-	-
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	-
Sma3	Clathrin adaptor, mu subunit, conserved site	IPR018240	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8SMW9

Fln msg: your sequence is shorter than subject: 75 - 415

Fln protein: RRDLGCHSCLTGTLRLESGVDCLREFPTLLVGFKIMGIGLSGLKIDKLDLQNVVYRPYKGFRAVTRAGNYEIRT*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTAACAGGGACTCTTCGGCTAGAAAGTGGTGTGGATTGCTTACGTGAATTTCCGACTCTCCTTGTTGGGTTCAAGATCATGGGAATTGGTCTATCAGGCTTGAAAATAGATAAATTGGACCTCCAAAATGTGGTCTATCGTCCATATAAAGGATTTCGTGCTGTAACCCGAGCGGGAAACTATGAAATAAGGACGTGA___AGATGGATTTGACAATGCAATTTAGTTGATGGCCAGGTTGCTTCGGCATCCCACTCTGCCTTGAGCGTAACAGATTGAGAATTAAAATCCCGTAAGAGGTAAATTGGAA

Fln Alignment:

uagpf_mira_c1384___CLTGTLRLESGVDCLREFPTLLVGFKIMGIGLSGLKIDKLDLQNVVYRPYKGFRAVTRAGNYEIRT
D8SMW9________________CLSGTLQLEPGINRLEEFPTFLVGFKIQGTAVSGLKVDKMDIRNVEYRPYKGFRAVTRAASYEIRT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
110	75		25		0.996481
114			75	25	0.996481
118	75	25			0.996481
125		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain