SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20464

Length: 910 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene20464

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24573	6/13
SustainPine v2.0	sp_v2.0_unigene24652	3/13
SustainPine v2.0	sp_v2.0_unigene83576	1/13
SustainPine v2.0	sp_v2.0_unigene83603	1/13

Source	Descriptions	Term	Type	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	retrotransposon unclassified	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
270		33		66	1.0
271	33		66		1.0
272	16			83	0.994512
275		16		83	0.994512
278	16			83	0.994512
283		16	83		0.994512
284	16	16		66	0.988813
285	83	16			0.994512
287	14			85	0.993533
288		14		85	0.993533
291		83		16	0.994512
315	20	40		40	1.0
342		33		66	1.0
344	16		83		0.994512
346	83		16		0.994512
348	83	16			0.994512
349	16		83		0.994512
352			16	83	0.994512
353		83		16	0.994512
391	80			20	0.995493
392	80		20		0.995493
396		80	20		0.995493
397		80	20		0.995493
398	20	20	60		0.99255
402	80		20		0.995493
404		20		80	0.995493
407		20		80	0.995493
411	80	20			0.995493
412		20	80		0.995493
414		25	75		0.996473
416		75		25	0.996473
418	25		75		0.996473
425		25		75	0.996473
434	25			75	0.996473
450			66	33	0.997452
451	66	33			0.997452
458			33	66	0.997452
460			33	66	0.997452
461	33			66	0.997452
464	33			66	0.997452
467		66		33	0.997452
469	33			66	0.997452
470	33			66	0.997452
477			33	66	0.997452
478	33	66			0.997452
479	66	33			0.997452
574	33		66		0.997452
586		66		33	0.997452
591			66	33	0.997452
609	66		33		0.997452
612		33		66	0.997452
613	33		66		0.997452
635		66		33	0.997452
642	66			33	0.997452
656		33		66	0.997452
657		66		33	0.997452
669	66	33			0.997452
682		33		66	0.997452
684		33	66		0.997452
687	66	33			0.997452
690	33		66		0.997452
739		66	33		0.997452
747		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain