SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20451

Length: 366 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene20451
GTTACAGATGAATAGAAGCACCTCTAACATAACTATTGAAGGAACATGCATTTTCTTGGACTTTAGAAGAAACTAAGGCCATTGAACATCTTAAACAGGTAATGTGCCAAGCACTGGTCTTAGCTACACATATTTCACAAAAACCCTTATTGTGGAATGTGATGGCTAAGGAAATGGAAATGGTGTCATTTTAATGCAAGAAGAAAGATCCATTGCTTTTGAAAGTCATCGAACCGAGGGAAATTATTTACACAAGACTATTTATGAGAAGGAAATGTTGGAAATTGTACATGCACTAATAAACAACGACCTTACCAAATGGGAAGACACTTCAGGGTAAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene20451 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24126	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	8.0e-11	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Blast2go	ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404	-	-	2.92668e-11	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BT42

Fln msg: Separated hits, possible frame ERROR between 125 and 301, Unexpected STOP codon at 3' end. Distance to subject end: 352 aas, your sequence is shorter than subject: 115 - 1365

Fln protein: YR*IEAPLT*LLKEHAFSWTLEETKAIEHLKQVMCQALVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQRPYQMGRHFRVK*

Protein Length: 116

Fln nts: GTTACAGATGAATAGAAGCACCTCTAACATAACTATTGAAGGAACATGCATTTTCTTGGACTTTAGAAGAAACTAAGGCCATTGAACATCTTAAACAGGTAATGTGCCAAGCACTGGTCTTAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAAACAACGACCTTACCAAATGGGAAGACACTTCAGGGTAAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig20451___YR*IEAPLT*LLKEHAFSWTLEETKAIEHLKQVMCQALVLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQRPYQMGRHFRVK
A5BT42________________YGKIVAPLIDMLRKNAFSWSQKAEEAFELLKQTMMQAPVLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKWRPYLLGRHFVVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain