SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20450

Length: 1396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene20450 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15746	13/67
SustainPine v2.0	sp_v2.0_unigene24375	20/67
SustainPine v2.0	sp_v2.0_unigene24652	11/67
SustainPine v2.0	sp_v2.0_unigene24662	5/67
SustainPine v2.0	sp_v2.0_unigene81836	2/67
SustainPine v2.0	sp_v2.0_unigene83457	2/67

Source	Descriptions	Term	Type	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	retrotransposon unclassified	-	-	56%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: your sequence is longer than subject: 424 - 66

Fln protein: MNPTISCNALAGITTPQTIKIEGQIKKIKVIVLIDSGSTHNFIHCKVAKELNCFLYPAPECQVMIANGGTINCSGKCHNIKLSMGEYVLTSPMLSIPMGGADVVLGVQWLQSLGTIAFNFQELFIKFSTEGKEVELRGIAGKPGKIISSNGMTKLLKKEQRGVIAQLCSLDVSTSESSISPDLQKVLDNHSKVFETPKGLPPIRDHDHAIHLIPGSVPPNIRPYRYPYAQKSEIERMVAEMLEAGIIQPSQSSFSAPVVLVHKKDGSWHMCLDYRELNKLTIKDKLPIPVIDELLDELHGSIYFTKLDLRSGYHQIRMKIEDIPKTAFRTHEGHYEFLVMPFGLTNAPSTFQGLMNSIFKPFLRKFVLVFFDDILIYSKSWKDHVEHVDKVLQLLEEKQLFAKRSKCFFGVQEVEYLGHILSE*

Protein Length: 425

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGAAGAGGAAGAAGAAAAGGAGAAGTAAGGGTCAAAAGGAGAGGTTATACTCCAAGAACAAAGCCTAGATAAAGAAGAA_-_ATGAATCCAACCATATCTTGTAATGCATTGGCAGGAATTACCACTCCTCAAACCATCAAGATAGAAGGACAAATCAAGAAGATAAAGGTAATAGTGTTGATTGATTCAGGAAGCACACACAATTTTATTCATTGCAAGGTAGCAAAAGAATTGAATTGCTTCCTATATCCAGCACCAGAGTGTCAAGTGATGATTGCAAATGGAGGAACAATAAATTGCTCTGGAAAGTGCCATAATATCAAGCTATCCATGGGAGAATATGTATTGACTAGCCCAATGCTTTCCATTCCAATGGGAGGTGCTGATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAATTTTCAAGAACTTTTCATCAAATTTTCTACAGAAGGAAAGGAAGTTGAATTAAGGGGTATTGCAGGGAAACCAGGAAAGATAATCAGCTCTAATGGTATGACAAAGCTTCTAAAAAAGGAGCAAAGAGGTGTAATTGCACAATTATGTTCGCTAGATGTTTCCACATCGGAATCATCTATTTCTCCAGATCTCCAAAAAGTCTTGGACAATCATTCCAAGGTATTTGAGACTCCCAAAGGTCTCCCACCTATTCGTGATCATGATCATGCTATTCATCTGATTCCAGGAAGTGTTCCTCCAAACATCAGGCCGTACAGATATCCCTATGCCCAAAAGAGTGAAATTGAACGTATGGTTGCAGAAATGCTAGAGGCTGGTATAATTCAACCAAGTCAAAGTTCTTTCTCTGCTCCAGTAGTATTGGTGCACAAGAAGGATGGATCATGGCACATGTGTCTGGATTATAGGGAGCTCAACAAGCTCACTATTAAAGATAAGTTGCCCATTCCTGTCATTGATGAATTACTGGATGAATTGCATGGATCAATTTACTTCACCAAGTTGGATCTTCGTTCGGGATATCATCAAATCAGAATGAAGATTGAAGACATTCCGAAAACGGCATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGCCTTACCAATGCACCTTCAACATTTCAAGGTTTGATGAATTCAATTTTCAAACCATTCCTTAGAAAATTTGTGTTAGTATTTTTTGATGATATACTAATCTACAGCAAGTCTTGGAAGGATCATGTTGAACATGTTGACAAGGTGCTACAACTATTGGAGGAGAAACAATTATTTGCAAAAAGATCCAAATGTTTCTTTGGAGTCCAGGAGGTGGAATATTTAGGTCATATTTTATCTGAGTGA___CAGCCAAGGTCACGACG

Fln Alignment:

Contig20450___FSAPVVLVHKKDGSWHMCLDYRELNKLTIKDKLPIPVIDELLDELHGSIYFTKLDLRSGYHQIRM
A9NWN2________________YSTPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHIRV

SNPs (tot: 140)

Position	A %	C %	G %	T %	Probability
228		83	16		0.999991
233	16	83			0.999991
273	16		83		0.999991
292		83		16	0.999991
311		75		25	1.0
312		41		58	1.0
318		83		16	0.999991
319	33		66		1.0
326		75		25	1.0
342			83	16	0.999991
356		83		16	0.999991
357		58		41	1.0
358	25		75		1.0
362	25		75		1.0
372		62		37	1.0
386			12	87	0.992554
389	75	25			1.0
405		90		10	0.90298
423	87	12			0.992554
424			87	12	0.992554
432	16	33	33		1.0
445	83	16			0.994512
447	83		16		0.994512
468	33	33	33		0.997753
475	33		66		0.997452
479	66		33		0.997452
612	90		10		0.90298
621		80		20	0.999996
622	30		70		1.0
625	10	90			0.90298
627	20		80		0.999996
630			88	11	0.923564
632			11	88	0.923564
649	27		72		1.0
656	45		54		1.0
679		70		30	1.0
680	10		90		0.90298
681	44	55			1.0
692			87	12	0.992554
724		12		87	0.992554
726	12		87		0.992554
728		85		14	0.993533
735	14			85	0.993533
736	14			85	0.993533
740	28		71		1.0
743	28		71		1.0
746		85		14	0.993533
748	42		57		1.0
749		28	71		1.0
753	85		14		0.993533
754	85		14		0.993533
758	85		14		0.993533
760	14		85		0.993533
764		71		28	1.0
765		57		42	1.0
766	42		57		1.0
767	85	14			0.993533
768	14			85	0.993533
769	14		85		0.993533
774	85	14			0.993533
775	85			14	0.993533
784	16		83		0.994512
789		16		83	0.994512
809	33	16	16	33	1.0
813		60		40	1.0
822		12		68	1.0
832		12		87	0.999964
839		87		12	0.999964
840		81		18	1.0
841	75		25		1.0
848		87		12	0.999964
850	12		75	12	0.999931
861		86		13	0.999973
862	6			73	1.0
863	6	20	60	6	1.0
872	33		66		1.0
903		85		14	0.999981
904		50		50	1.0
905	28		71		1.0
914	7	15		76	0.999983
916		46	53		1.0
924			83	16	0.999991
927		83	16		0.999991
941			90	10	0.90298
944	80			20	0.999996
950		88		11	0.923564
954	88		11		0.923564
960	11		88		0.923564
964		88	11		0.923564
967		11		88	0.923564
969	11		88		0.923564
970	11		88		0.923564
974		88		11	0.923564
981		77		22	0.999999
987		88		11	0.923564
989	42		57		1.0
996		85		14	0.993533
997		71	14	14	0.984337
1001			85	14	0.993533
1006			83	16	0.994512
1024		85		14	0.999981
1042			80	20	1.0
1049		13		86	0.999973
1064		11		88	0.999937
1068		83	5	11	0.999887
1069	83			16	1.0
1073	11	88			0.999952
1079	88		11		0.999952
1080		17		82	1.0
1095	6	80		13	0.999961
1098		20		80	1.0
1116	13		86		0.999973
1119	6	60		33	1.0
1128	20		80		1.0
1154		40		60	1.0
1156	60		40		1.0
1161		22	77		0.999999
1173	12		87		0.992554
1174			50	50	1.0
1175			87	12	0.992554
1177	25		75		1.0
1179		25		75	1.0
1180		50		50	1.0
1182		87		12	0.992554
1184	12		87		0.992554
1188	12	87			0.992554
1195	12	87			0.992554
1205		28		71	1.0
1208	14	42		42	1.0
1211		14		85	0.993533
1242			83	16	0.994512
1257		83		16	0.994512
1258		33		66	1.0
1261		60		40	1.0
1279			80	20	0.995493
1281	20			80	0.995493
1282			20	80	0.995493
1283			80	20	0.995493
1286		25		75	0.996473
1287	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain