SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20393

Length: 1097 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene20393 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24416	11/20
SustainPine v2.0	sp_v2.0_unigene24586	1/20
SustainPine v2.0	sp_v2.0_unigene24625	3/20
SustainPine v2.0	sp_v2.0_unigene24700	1/20
SustainPine v2.0	sp_v2.0_unigene83407	1/20
SustainPine v2.0	sp_v2.0_unigene83691	1/20
SustainPine v2.0	sp_v2.0_unigene83692	1/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	9.0e-21	46%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	57%
Blast2go	gag-pol polyprotein	-	-	3.50465e-23	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
140	66		33		0.997452
143		66		33	0.997452
146	33	66			0.997452
148		66		33	0.997452
149	66		33		0.997452
155			66	33	0.997452
189		66		33	0.997452
196	33		66		0.997452
202	66		33		0.997452
216	33		66		0.997452
231		66		33	0.997452
241		33		66	0.997452
245	33			66	0.997452
264	33		66		0.997452
285	33	66			0.997452
287		66		33	0.997452
298	33			66	0.997452
299		33	66		0.997452
312		66		33	0.997452
313		33		66	0.997452
314	33		66		0.997452
323			33	66	0.997452
325	66		33		0.997452
617		90		10	0.90298
618	10	90			0.90298
634		70		30	1.0
641		90		10	0.90298
734		75		25	0.996473
735			25	75	0.996473
736	25			75	0.996473
739			25	75	0.996473
740	25		75		0.996473
741		25		75	0.996473
742	25			75	0.996473
743			25	75	0.996473
744		25		75	0.996473
747	25			75	0.996473
748			25	75	0.996473
749			25	75	0.996473
750		75		25	0.996473
754	75		25		0.996473
756	75	25			0.996473
763		75		25	0.996473
784		25		75	0.996473
786	75		25		0.996473
797			25	75	0.996473
805	25	75			0.996473
806			25	75	0.996473
808		75	25		0.996473
809	25			75	0.996473
814	75		25		0.996473
820	75		25		0.996473
822		25	75		0.996473
824	50	25	25		0.995533
825		50	25	25	0.995533
826	25		25	50	0.995533
827	25	25		50	0.995533
828		75	25		0.996473
830			33	66	0.997452
832	66	33			0.997452
833	33		66		0.997452
836		66	33		0.997452
844		33		66	0.997452
845			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain