SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20375

Length: 465 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene20375
CGTCGTGACCTTGGCTGTCACTCATTACTTCACCAAGTTGGATCTTCGTTCAGGATATCATCAAATCAGAATGAAGACTGAAGACATTTCGAAAACAACATTTAGAACTCATGAGGTTCATTATGAATTTTTGGTTATGCCTTTTGGCCTTATCAATGCACCTTCTACATTTCAAGGTTTGATGAATTCCATTTTCAAACTCTTCCTTAGAAAATTTGTGTTAGTATTTTTTGATGATATACTAATCTACAGCAAGTCTTGGAAGGATCATGTTGAACATGTTGATAGGGTGCTCAAACTATTGGAGGAGAAATAATTATATGCAAAAAGCTCCAAATGTTTCTTTGGAGTACAAGAGGTGGAATATTTGGGTCATATTGTATCTCATGAAGGTGTTAAGGTAGACCCTAGCAAAATTAAAGCCATTAAGGAATAGAAAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene20375 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23970	2/8
SustainPine v2.0	sp_v2.0_unigene24662	4/8

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR	-	-	59%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	48%
Blast2go	rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	76%
Blast2go	binding	GO:0005488	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: your sequence is shorter than subject: 105 - 142

Fln protein: VVTLAVTHYFTKLDLRSGYHQIRMKTEDISKTTFRTHEVHYEFLVMPFGLINAPSTFQGLMNSIFKLFLRKFVLVFFDDILIYSKSWKDHVEHVDRVLKLLEEK*

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTACTTCACCAAGTTGGATCTTCGTTCAGGATATCATCAAATCAGAATGAAGACTGAAGACATTTCGAAAACAACATTTAGAACTCATGAGGTTCATTATGAATTTTTGGTTATGCCTTTTGGCCTTATCAATGCACCTTCTACATTTCAAGGTTTGATGAATTCCATTTTCAAACTCTTCCTTAGAAAATTTGTGTTAGTATTTTTTGATGATATACTAATCTACAGCAAGTCTTGGAAGGATCATGTTGAACATGTTGATAGGGTGCTCAAACTATTGGAGGAGAAATAA___TTATATGCAAAAAGCTCCAAATGTTTCTTTGGAGTACAAGAGGTGGAATATTTGGGTCATATTGTATCTCATGAAGGTGTTAAGGTAGACCCTAGCAAAATTAAAGCCATTAAGGAATAGAAAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig20375___LAVTHYFTKLDLRSGYHQIRMKTEDISKTTFRTHEVHYEFLVMPFGLINAPSTFQGLMNSIXXXXXXXXXXXXFDDIL---IYSKSWKDHVEHV
P31843________________LAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
66		33	66		1.0
72	66			33	0.997452
98	33		66		1.0
119		66	33		0.997452
123		33	66		0.997452
132			66	33	0.997452
134			33	66	0.997452
135	33		33		0.997753
136			66	33	0.997452
143			50	50	1.0
157		50		50	1.0
171			50	50	1.0
172			50	50	1.0
218	33		66		0.997452
332	25		75		0.996473
334	25		75		0.996473
342	75		25		0.996473
353	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain