SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20220

Length: 689 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene20220

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23016	15/25
SustainPine v2.0	sp_v2.0_unigene29286	8/25

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate kinase n=4 Tax=Picea sitchensis RepID=A9NW50_PICSI	-	-	78%
FL-Next	sp=Phosphoglycerate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	phosphoglycerate kinase	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phosphoglycerate kinase	IPR001576	-	-
Sma3	Phosphoglycerate kinase, N-terminal	IPR015824	-	-
Sma3	Phosphoglycerate kinase, C-terminal	IPR015901	-	-

Full-Lengther Next Prediction

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
69	66			33	0.997452
71		25	75		0.996473
72			75	25	0.996473
73			25	75	0.996473
76	50	25	25		0.995533
77	50			50	1.0
78			75	25	0.996473
79		50	25		0.995533
80	75		25		0.996473
81	50	50			1.0
82	50	25		25	0.995533
83	50		25	25	0.995533
85		25	75		0.996473
86	25		75		0.996473
87	50	50			1.0
88		16		83	0.994512
89		16	83		0.994512
91	66	33			1.0
92	16		83		0.994512
93		16	83		0.994512
94	16			83	0.994512
96	83	16			0.994512
100	83	16			0.994512
102	83		16		0.994512
103	83			16	0.994512
104	83	16			0.994512
106	83	16			0.994512
111		50		50	1.0
167	85		14		0.993533
170		85	14		0.993533
171	85			14	0.993533
175		85		14	0.993533
179	85		14		0.993533
181		14	85		0.993533
183	75	25			1.0
184			87	12	0.992554
189	87	12			0.992554
194	87		12		0.992554
204	87	12			0.992554
206	87	12			0.992554
207	12	87			0.992554
231	4	12		84	1.0
234	4	12		83	1.0
235		91	8		0.999766
239	87	12			1.0
240	87	8		4	0.999414
241			91	8	0.999766
243		4	8	87	0.999414
244	91		8		0.999766
245		8		91	0.999766

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain