SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20179

Length: 2211 nt

UniGene Fasta

>uagpf_v2_unigene20179
CGTCGTGACCTTGGCTGTCACTCAATTTGTATTTGTATACGTTGGCCCCCAAGATTGAAATTAGAAATCGTTCTATCTTGAGTCTTCCTTGTTTAGCCAAGGTTGAAACGGATATTGCCCTGTTTCCACCCAGATCATTTGTTATAAAGAGATCTGCTCTTCTTCTTTCTGTGGTATAGGTTGTTGAGAGGGTAAGAGTTGCAATATTTTGACATTGAAGAAAATTTTCAGTATTAAGTTAAGAGTTTAGTGCAGAAACCATGCCTGCCGCGGGATTTGCCGCTCCAGTAGCGCCTGGGGCTGTAGAGTTCGAGGCGCGCATAACGCCGTATGTGATCATTACTTGTATCATGGCTGCGAGCGGCGGGTTGATGTTTGGCTACGATGTCGGAATCTCTGGTGGAGTGACTTCCATGGATGATTTTCTGGAGAAATTTTTCCACAAAGTCTATATCAACAAGCAAAAGGCGAAAGAAAATGCATACTGCAAGTACGACAATCAGGGATTACAGCTGTTTACTTCCTCTCTGTATCTAGCCGGTCTCATAGCGACCTTTTTTGCATCATATACTACCAGAAGATTTGGCCGGAGACCAACCATGCTTATTGCCGGTATATTCTTTCTCGTGGGAGTCACCTTCAATGCGGCAGCGCAAGATCTTGCTATGCTCATCGTCGGAAGATTATTACTGGGATGTGGAGTCGGATTTGCTAATCAGGCGGTTCCTCTATTCCTGTCAGAGATAGCACCGACTAGAATTCGAGGGGGTCTAAACATCCTCTTCCAGCTCAACATTACGATAGGCATTCTGTTTGCGAATTTGGTGAACTACGGAACAAGTAAGATCACGCCATGGGGATGGAGGCTTTCGTTGGGCTTGGCAGGGATCCCTGCAGTTCTGCTCACTGTTGGCTCTATATTTTTAGTGGAGACACCCAACAGTCTGATTGAAAGAGGATACCTGGAAGACGGCAAGCATGTATTGAAAAAAATCAGAGGCACCAATAATGTGGATGCAGAGTTCAATGAACTAGTCGAGGCTAGTAGAATAGCGGCGACAGTGAAGCATCCATTCCGAAACCTTTTGAAGCGCAGGAATAGGCCTCAGCTTGTCATTACCTTTTTTCTGCAGCTCTTCCAGCAGTGTACCGGTATCAATGCCATTATGTTTTATGCTCCTGTGCTCTTCCAGACCTTGGGATTCAAGAACGATGCTTCACTTTACTCTGCCGTTATTACTGGAGCCGTCAATGTATTATCAACTGTTATATCTATCTATGCGGTCGATAAAGTCGGTAGAAGAGCCCTGACCCTCGAAGCAACACGACAGAACCTCGGCTCACACGCAATTATTGCAATCCTTCTGGCAACAGGTATGAAGGACGAGTCAAAACTTCCTCACGGCACGGCCATTGTAATAGTGTTGCTGATTTGCGTTTTCGTATCATCCTTTGCCTGGTCATGGGGACCACTGGGATGGCTGATTCCCAGCGAAACCTTTCCCCTGGAAACAAGGTCTGCTGGACAGAGTGTGACCGTCTGCGTGAATCTCCTGTTCACTTTTGTGATTGCACAGGCCTTCTTGTCAATGCTTTGCCATTTCAAATACGGGATCTTTTTGTTCTTTGCCAGCTGGGTGTTGGTTATGTCCGTATTTGTGTTGTTTCTCCTTCCAGAGACGAAGAATATCCCAATTGAAGAGATGACAGACAGAGTCTGGAAGAAACATTGGCTGTGGAAGAGATTTGTCACAGATGCCGACCTCATTGACGACGACGACGAAGATGTTTATTCCAAGAAAGAAAATGGTAAAGGCGATGCCAAAGCCTATAATAATTCCCAGTTGTGATCTTTCTCCATCCCATTTCATCAGTTATGATCTTTGTCCATCCCATTTCATCACAGCGAGAATCACAGATCCATCCACCCCACCACACAGTTAACCGTCAGGTCACCTCTGGCGCAGCATCATAGGCGCGTAACAAAATTTTAACTACCGCTTATTACTCGCAAGATTAATGTAAAGCAAGTATTTACAGTCTCACACTCCACGTATCACATGTATTGTATCTTTTCGATGATTTCATCTGTCATCCTCTTTAAATTTTTCTTGAAATGTTAGGCCGAATCGGCACTTAAAGAGCAGTCGATACTTAGACTACTCCTGGACTTAAATTCCTACCAGTGAAGTTATAAAATCTGGACATAAG

Ace file of the UniGene uagpf_v2_unigene20179

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22406	125/134
SustainPine v2.0	sp_v2.0_unigene80458	3/134

Source	Descriptions	Term	Type	Identity
AutoFact	monosaccharide transporter 4 [Oryza sativa Japonica Group]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	hexose transporter	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	0.0	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg:

Fln protein: MPAAGFAAPVAPGAVEFEARITPYVIITCIMAASGGLMFGYDVGISGGVTSMDDFLEKFFHKVYINKQKAKENAYCKYDNQGLQLFTSSLYLAGLIATFFASYTTRRFGRRPTMLIAGIFFLVGVTFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTSKITPWGWRLSLGLAGIPAVLLTVGSIFLVETPNSLIERGYLEDGKHVLKKIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQLVITFFLQLFQQCTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIYAVDKVGRRALTLEATRQNLGSHAIIAILLATGMKDESKLPHGTAIVIVLLICVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMTDRVWKKHWLWKRFVTDADLIDDDDEDVYSKKENGKGDAKAYNNSQL*

Protein Length: 531

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTATTTGTATACGTTGGCCCCCAAGATTGAAATTAGAAATCGTTCTATCTTGAGTCTTCCTTGTTTAGCCAAGGTTGAAACGGATATTGCCCTGTTTCCACCCAGATCATTTGTTATAAAGAGATCTGCTCTTCTTCTTTCTGTGGTATAGGTTGTTGAGAGGGTAAGAGTTGCAATATTTTGACATTGAAGAAAATTTTCAGTATTAAGTTAAGAGTTTAGTGCAGAAACC_-_ATGCCTGCCGCGGGATTTGCCGCTCCAGTAGCGCCTGGGGCTGTAGAGTTCGAGGCGCGCATAACGCCGTATGTGATCATTACTTGTATCATGGCTGCGAGCGGCGGGTTGATGTTTGGCTACGATGTCGGAATCTCTGGTGGAGTGACTTCCATGGATGATTTTCTGGAGAAATTTTTCCACAAAGTCTATATCAACAAGCAAAAGGCGAAAGAAAATGCATACTGCAAGTACGACAATCAGGGATTACAGCTGTTTACTTCCTCTCTGTATCTAGCCGGTCTCATAGCGACCTTTTTTGCATCATATACTACCAGAAGATTTGGCCGGAGACCAACCATGCTTATTGCCGGTATATTCTTTCTCGTGGGAGTCACCTTCAATGCGGCAGCGCAAGATCTTGCTATGCTCATCGTCGGAAGATTATTACTGGGATGTGGAGTCGGATTTGCTAATCAGGCGGTTCCTCTATTCCTGTCAGAGATAGCACCGACTAGAATTCGAGGGGGTCTAAACATCCTCTTCCAGCTCAACATTACGATAGGCATTCTGTTTGCGAATTTGGTGAACTACGGAACAAGTAAGATCACGCCATGGGGATGGAGGCTTTCGTTGGGCTTGGCAGGGATCCCTGCAGTTCTGCTCACTGTTGGCTCTATATTTTTAGTGGAGACACCCAACAGTCTGATTGAAAGAGGATACCTGGAAGACGGCAAGCATGTATTGAAAAAAATCAGAGGCACCAATAATGTGGATGCAGAGTTCAATGAACTAGTCGAGGCTAGTAGAATAGCGGCGACAGTGAAGCATCCATTCCGAAACCTTTTGAAGCGCAGGAATAGGCCTCAGCTTGTCATTACCTTTTTTCTGCAGCTCTTCCAGCAGTGTACCGGTATCAATGCCATTATGTTTTATGCTCCTGTGCTCTTCCAGACCTTGGGATTCAAGAACGATGCTTCACTTTACTCTGCCGTTATTACTGGAGCCGTCAATGTATTATCAACTGTTATATCTATCTATGCGGTCGATAAAGTCGGTAGAAGAGCCCTGACCCTCGAAGCAACACGACAGAACCTCGGCTCACACGCAATTATTGCAATCCTTCTGGCAACAGGTATGAAGGACGAGTCAAAACTTCCTCACGGCACGGCCATTGTAATAGTGTTGCTGATTTGCGTTTTCGTATCATCCTTTGCCTGGTCATGGGGACCACTGGGATGGCTGATTCCCAGCGAAACCTTTCCCCTGGAAACAAGGTCTGCTGGACAGAGTGTGACCGTCTGCGTGAATCTCCTGTTCACTTTTGTGATTGCACAGGCCTTCTTGTCAATGCTTTGCCATTTCAAATACGGGATCTTTTTGTTCTTTGCCAGCTGGGTGTTGGTTATGTCCGTATTTGTGTTGTTTCTCCTTCCAGAGACGAAGAATATCCCAATTGAAGAGATGACAGACAGAGTCTGGAAGAAACATTGGCTGTGGAAGAGATTTGTCACAGATGCCGACCTCATTGACGACGACGACGAAGATGTTTATTCCAAGAAAGAAAATGGTAAAGGCGATGCCAAAGCCTATAATAATTCCCAGTTGTGA___TCTTTCTCCATCCCATTTCATCAGTTATGATCTTTGTCCATCCCATTTCATCACAGCGAGAATCACAGATCCATCCACCCCACCACACAGTTAACCGTCAGGTCACCTCTGGCGCAGCATCATAGGCGCGTAACAAAATTTTAACTACCGCTTATTACTCGCAAGATTAATGTAAAGCAAGTATTTACAGTCTCACACTCCACGTATCACATGTATTGTATCTTTTCGATGATTTCATCTGTCATCCTCTTTAAATTTTTCTTGAAATGTTAGGCCGAATCGGCACTTAAAGAGCAGTCGATACTTAGACTACTCCTGGACTTAAATTCCTACCAGTGAAGTTATAAAATCTGGACATAAG

Fln Alignment:

Contig20179___RITPYVIITCIMAASGGLMFGYDVGISGGVTSMDDFLEKFFHKVYINKQKAKENAYCKYDNQGLQLFTSSLYLAGLIATFFASYTTRRFGRRPTMLIAGIFFLVGVTFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTSKITPWGWRLSLGLAGIPAVLLTVGSIFLVETPNSLIERGYLEDGKHVLKKIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQLVITFFLQLFQQCTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIYAVDKVGRRALTLEATRQNLGSHAIIAILLATGMKDESKLPHGTAIVIVLLICVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKYGIFLFFASWXXXXXXXXXXXXPETKNIPIEEMTDRVWKKHWLWKRFVTXXXXXXXXXXXVYSKKENGKGDAKAYNNSQL
B8LLP1________________RITPYVIMTCIIAASGGLMFGYDVGISGGVTSMDDFLEKFFPAVYRKKKLVKENAYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRRYGRRPTMLIAGLFFLVGVIFNAAAQDLAMLIVGRLLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNITIGILFANLVNYGTNKITPWGWRLSLGLAGIPAILLTVGSIFLVETPNSLIERGHLENGKHVLKKIRGTNNVDAEFNELVEASRIAATVKHPFRNLLKRRNRPQIVITICLQIFQQFTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIFAVDKVGRRALLLEAGVQMFISQVIIAILLATGLKDGEDLPHATAIIIVLLVCVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFAIAQAFLSMLCHLKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMMERVWRKHWLWKRFVTDADLMDDDDEDVYSKQENGKGNGKTYDNSQL

SNPs (tot: 176)

Position	A %	C %	G %	T %	Probability
1		66		33	0.997452
4	33	66			0.997452
5			66	33	0.997452
6		33		66	0.997452
99	80		20		0.995493
100	80			20	0.995493
101		20	80		0.995493
107	80	20			0.995493
108	80			20	0.995493
109		80		20	0.995493
112	80	20			0.995493
114	80		20		0.995493
116		20		80	0.995493
117	20		80		0.995493
119		80		20	0.995493
121	20			80	0.995493
151		12	87		0.992554
152	87		12		0.992554
157	12	87			0.992554
158		12		87	0.992554
163			12	87	0.992554
164			12	87	0.992554
167			12	87	0.992554
170	12			87	0.992554
171		12	87		0.992554
174		12	87		0.992554
175	12			87	0.992554
182		10		90	0.90298
185		10		90	0.90298
187	90			10	0.90298
191		10	90		0.90298
192		10	90		0.90298
195	90			10	0.90298
199		10		90	0.90298
204	81	6	12		0.999943
207		11		88	0.999952
208	5	11		82	0.999919
237	68		31		1.0
374		12		87	0.999964
415	88		11		0.999937
417		11	88		0.999937
425			12	87	0.999964
426			12	87	0.999964
430		12	87		0.999964
432		12	87		0.999964
433	87			12	0.999964
434	87	12			0.999964
634			87	12	0.992554
637	87		12		0.992554
747	85	14			0.999981
749		85		14	0.999981
750	85	14			0.999981
751		85	14		0.999981
752		85		14	0.999981
757	85			14	0.999981
759	85		14		0.999981
760	85	14			0.999981
804	89	10			0.999919
806			89	10	0.999919
807		89	10		0.999919
809		10		89	0.999919
810		10		89	0.999919
811		89		10	0.999919
814			10	89	0.999919
815		11		88	0.999952
818		88		11	0.999952
819		11	88		0.999952
821	88	11			0.999952
823		11		88	0.999952
824	11			88	0.999952
1083		83		16	0.994512
1085			16	83	0.994512
1086		16		83	0.994512
1097	71		28		1.0
1098			71	28	1.0
1102	71	28			1.0
1104	71			28	1.0
1106	14		85		0.993533
1109		71	28		1.0
1114			71	28	1.0
1127		85	14		0.993533
1128	14			71	0.984337
1129		14		85	0.993533
1130			14	85	0.993533
1132			14	85	0.993533
1133	14			85	0.993533
1135		14		85	0.993533
1136			85	14	0.993533
1137		85		14	0.993533
1138	85		14		0.993533
1142		85	14		0.993533
1144		14		85	0.993533
1145	14	85			0.993533
1147	85			14	0.993533
1148		14	85		0.993533
1149	14	85			0.993533
1258	85		14		0.993533
1264		14		85	0.993533
1265	85	14			0.993533
1267		85		14	0.993533
1268	85		14		0.993533
1269	85		14		0.993533
1274		14		85	0.993533
1277	85	14			0.993533
1298	80	20			0.999996
1299		10	90		0.90298
1301		90		10	0.90298
1303			90	10	0.90298
1305	90			10	0.90298
1306		10	90		0.90298
1308	80			20	0.999996
1310	90		10		0.90298
1313			90	10	0.90298
1315		10		90	0.90298
1318	10			90	0.90298
1390	87		12		0.992554
1393	87	12			0.992554
1397	87		12		0.992554
1398	87			12	0.992554
1399	87		12		0.992554
1402		12		87	0.992554
1404		87		12	0.992554
1405		87	12		0.992554
1406			12	87	0.992554
1409		87		12	0.992554
1411			87	12	0.992554
1417		87		12	0.992554
1568		9		90	0.999872
1569			9	90	0.999872
1571		9		90	0.999872
1580	90		9		0.999872
1582	90			9	0.999872
1584			90	9	0.999872
1748			90	10	0.90298
1749	90	10			0.90298
1751	90	10			0.90298
1770		88	11		0.923564
1773	77		11		0.968132
1774		11	11	77	0.968132
1779			87	12	0.992554
1780	87			12	0.992554
1781		87	12		0.992554
1783	87	12			0.992554
1784		12		87	0.992554
1788	11		88		0.923564
1789	77	11		11	0.968132
1790	77	11		11	0.968132
1791		14	85		0.993533
1796	14			85	0.993533
1797		14		85	0.993533
1798	85	14			0.993533
1801		85	14		0.993533
1802		85	14		0.993533
1803	85	14			0.993533
1804	85			14	0.993533
1806	85			14	0.993533
1807	85	14			0.993533
1809		14	85		0.993533
1810	85			14	0.993533
1811	85	14			0.993533
1850	40	30		30	1.0
1852			10	90	0.999898
1853	20	30		50	1.0
1854		20	80		1.0
1856	25	5	70		1.0
1857	90	10			0.999898
1858		30		70	1.0
1860	10			90	0.999898
1862			30	70	1.0
1865		70		30	1.0
1868		5		70	1.0
1870		80		20	1.0
1872	95		4		0.99692
1874			4	90	0.9465
1876		95	4		0.99692
1878		4		95	0.99692

SSRs (tot: 1)

Start position	End position	Sequence	Length
1770	1783	GAC GAC GAC GAC GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain