SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20111

Length: 1144 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene20111

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18237	83/134
SustainPine v2.0	sp_v2.0_unigene29117	32/134
SustainPine v2.0	sp_v2.0_unigene78547	15/134

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Orf protein n=1 Tax=Pseudotsuga menziesii RepID=Q40928_PSEMZ	-	-	3.0e-26	66%
FL-Next	tr=Orf protein; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	83%
Blast2go	seed maturation protein	-	-	4.26906e-32	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Late embryogenesis abundant protein, LEA-25/LEA-D113	IPR005513	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
62			33	66	0.997452
64		33	33	33	0.997753
66		66		33	0.997452
67			33	33	0.997753
68	33		66		1.0
69		33		66	0.997452
71	75		12	12	0.975346
72		87	12		0.992554
73	12		25	62	1.0
74		87		12	0.992554
75	75		12	12	0.975346
76	14		42		1.0
77	14	28		14	1.0
78	42	28		14	1.0
79	85			14	0.993533
81	75	12	12		0.975346
82	75		12	12	0.975346
84	87			12	0.992554
85			12	87	0.992554
87		12	87		0.992554
90	87	12			0.992554
91	12		87		0.992554
437	55			44	1.0
448	87	12			0.992554
449	87			12	0.992554
450	87			12	0.992554
451		12		87	0.992554
502	85		14		0.999981
527		84	15		0.999986
800		33		66	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
560	571	CAC CAC CAC CAC	12
1038	1052	ACATT ACATT ACATT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain