SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20097

Length: 1797 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene20097

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16314	73/81

Source	Descriptions	Term	Type	Identity
AutoFact	Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9STR3_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	endosomal p24a protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	cellular zinc ion homeostasis	GO:0006882	Biological Process	87%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Fibrillarin	IPR000692	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Protein of unknown function DUF914, eukaryotic	IPR009262	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: Separated hits, possible frame ERROR between 429 and 431,

Fln protein: MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRAPTNASLLCVYVGTGVQFFAMTLVTMIFAVLGFLSPSNRGGLMTAMxxLLWVFMGLFAGYASSRLYKMFKGTEWRKNTLKTAFLFPGIAFCIFFILNALIWGEKSSGAVPFGTMFALVLLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPIFSILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFVILIVTCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSAFYLFLYATFYFFTKLEMTKLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID*

Protein Length: 373

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTCACTTATGATGTTACTTTCCGGGAGAGCCCTGTGAAATGGGCATCACGTTGGGATACTTACCTTCTT_-_ATGACAGATGATCAGATCCATTGGTTCTCTATCATCAACTCATTGATGATTGTTTTATTTCTTTCCGGAATGGTTGCAATGATCATGATGCGAACATTGTACCGGGATATCTCAAAATACAACCAATTAGAAACACAGGATGAGGCTCAAGAAGAAACTGGATGGAAATTGGTCCATGGAGATGTGTTCAGGGCCCCAACCAATGCAAGCTTACTTTGTGTCTATGTGGGAACTGGAGTTCAGTTTTTTGCCATGACACTAGTGACAATGATATTTGCAGTCCTTGGTTTCCTTTCTCCTTCGAACCGTGGAGGTTTAATGACAGCCATGCTxxxCCTATTATGGGTGTTTATGGGTTTGTTTGCTGGGTATGCATCGTCACGTCTATATAAGATGTTCAAGGGCACAGAATGGAGGAAGAACACGCTGAAGACAGCATTCTTGTTTCCAGGCATTGCCTTTTGCATTTTCTTTATTCTCAATGCACTGATATGGGGAGAAAAATCATCTGGTGCAGTTCCTTTTGGGACTATGTTTGCCTTGGTCCTTTTATGGTTTGGAATTTCTGTGCCATTGGTCTTTGTGGGCAGTTACTTTGGCTACAAGAAACCTGCAATTGAGGATCCAGTGAAGACCAATAAAATCCCCAGGCAGATTCCAGAGCAAGCTTGGTATATGCAGCCCATTTTCTCAATACTAATTGGAGGCATTTTGCCTTTTGGAGCTGTATTCATTGAACTGTTCTTCATATTAACTTCAATATGGCTGCATCAGTTCTACTATATATTTGGGTTCCTGTTCATTGTCTTTGTGATCCTCATTGTTACATGTGCAGAGATCACCATTGTCCTGTGCTACTTTCAATTGTGCAGTGAAGATTACAACTGGTGGTGGAGATCTTATTTGACTGCAGGCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCACCAAGCTGGAGATGACAAAGCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGA___GGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAAGTTTTGGTTTAGGGGAATGGTGCTTGCTCCTTTTATGTTGTTTTAGAGGTTTTTGGGTAACATTACAGGAGACACCAACGTCAATGTGCTGCTGTGGGAGTTAACACTGAATACGTATGTTCATAGATTAATCTCCCGCTACATTCTCTTGTTGAAATATAAACTCAATTCCCATTGTAATCAATTCAATGCTATATTTTATGCAGTTGAGGCCAAAACCACTTGATATTTATTGGTTTTCATGTTCCTTCAACCATGGGATAGGGTATCATACAACATTCCTAGCATCATTCTGATGAAGGATAGGATTCTTTTTATCTAAACAGAGTTTATTTTCCAGTTTCGTGAATGCTAATACGTTTTTCAATGAACAGTTGGTGTTCTTGCGAAGGTTTTGTACAATAAACAGTTGGCATTGTTCTCATTGCCGTGGCTGGCATTCACAATTTATTCTTTGGGCTGCATCTTAAAACTCTAGTCTTTC

Fln Alignment:

Contig20097___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRAPTNASLLCVYVGTGVQFFAMTLVTMIFAVLGFLSPSNRGGLMTAMLxLLWVFMGLFAGYASSRLYKMFKGTEWRKNTLKTAFLFPGIAFCIFFILNALIWGEKSSGAVPFGTMFALVLLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPIFSILIGGILPFGAVFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSXXXXXXXXXXXXXXKLEMTKLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID
D5AC25________________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVxLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 115)

Position	A %	C %	G %	T %	Probability
129	75		25		1.0
130	25			75	1.0
132	66	22	11		0.999999
134		77		22	0.999999
135	66		33		1.0
136	66		22	11	0.999999
137		88	11		0.923564
138	11			88	0.923564
140	66	11	22		0.999999
142		22		77	0.999999
143	22		77		0.999999
144	66	33			1.0
146		22	77		0.999999
150		11	88		0.923564
151	11			88	0.923564
152		11		88	0.923564
154		11		88	0.923564
424	80			20	0.995493
429	66		16	16	0.988813
431		16	83		0.994512
432		66	16		0.988813
436		57	14		1.0
438	57	14	14	14	0.979185
439			33	66	1.0
440		16	16	66	0.988813
441	66	16	16		0.988813
442	16	16		66	0.988813
443		16	66	16	0.988813
444		33	50	16	1.0
445	16	16	50	16	0.988986
446	16			83	0.994512
447		16	83		0.994512
448			16	83	0.994512
449		33		66	1.0
450	16			83	0.994512
451	85		14		0.993533
453		14	85		0.993533
454	14		85		0.993533
455		14	85		0.993533
457		14		85	0.993533
458	14			85	0.993533
544		44		55	1.0
545			44	55	1.0
548		55	44		1.0
549	55			44	1.0
551	44		55		1.0
553	55	44			1.0
557		55	44		1.0
560			44	11	1.0
563	22	22		55	0.999999
564		22		77	0.999999
565		11	55	22	0.999999
566	11	88			0.923564
568	22			22	0.999999
615		10		90	0.90298
617		90		10	0.90298
618	90	10			0.90298
621			10	90	0.90298
622	10	90			0.90298
625		10		90	0.90298
634	90		10		0.90298
636		10	90		0.90298
637	10			90	0.90298
638		10		90	0.90298
642	10	90			0.90298
762	81		18		0.999994
763			81	18	0.999994
764	80	20			0.999996
766		80		20	0.999996
767	80		20		0.999996
769		20	80		0.999996
776	80	20			0.999996
778	80		20		0.999996
785		71		28	1.0
865		16		83	0.994512
867			83	16	0.994512
872	83	16			0.994512
874		83		16	0.994512
875	83		16		0.994512
877		16		83	0.994512
879		83	16		0.994512
884	71	14	14		0.984337
885	14			85	0.993533
886	85		14		0.993533
887	14			85	0.993533
888	85	14			0.993533
889		14		85	0.993533
894	5	10	84		0.999846
901		11		88	0.999937
927			41	58	1.0
959	87			12	0.999964
961			12	87	0.999964
962		12		87	0.999964
1027		14		85	0.999981
1028	14			85	0.999981
1289	86	13			0.999973
1292		86		13	0.999973
1293	86		13		0.999973
1298		46		15	1.0
1299		53		46	1.0
1300	61			38	1.0
1301	45	18		36	1.0
1304	18			81	0.999994
1497	90		9		0.999872
1499		9		90	0.999872
1502	90		10		0.999898
1504		10		90	0.999898
1506	90			10	0.999898
1507	85		5	10	0.999793
1508			10	90	0.999898
1509			10	90	0.999898
1511	90			10	0.999898
1512	90		10		0.999898
1514	10		90		0.999898
1767	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain