SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20092

Length: 943 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene20092

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15383	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=GTP-binding nuclear protein Ran-A1 gb\|AAA73563.1\| GTP-binding protein [Nicotiana tabacum]	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	gtp-binding nuclear protein ran-3-like	-	-	96%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
22	25		50		0.995533
28		20	80		0.995493
29	80			20	0.995493
31		80	20		0.995493
36	20	80			0.995493
37		20		80	0.995493
38		20	80		0.995493
42		25		25	0.995533
48	80		20		0.995493
312			20	80	0.995493
315	80		20		0.995493
316		80		20	0.995493
317	80		20		0.995493
319	80	20			0.995493
320		20		80	0.995493
327	80	20			0.995493
328	80			20	0.995493
332		20		80	0.995493
333	20	80			0.995493
334		20	80		0.995493
336		20		80	0.995493
337	20			80	0.995493
439			87	12	0.992554
714		33	66		0.997452
720		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
777	793	TGA TGA TGA TGA TGA TG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain