SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene20032

Length: 363 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene20032
CGTCGTGACCTTGGCTGTCACTCAATTTATCAAATACTTGGGTTTATGTGCGGAAGATGGAGTGGCAAGATGATTTTGTCATCTTGTTAGAGCTTGCAAGCAGAAATCTGTTGAATTTAACAAGCAATATCCGGTGCAATGGAAGACGATTAGTGGTGTGCGATGAATTTTGGTGAGGCAAAGGCTTTGCTTTTACTCTTTTCTGCAAGTAAATACTTTCTTCCATCATTTTTTAGTTCCACGAGGAAACTGAAAGTCCTCATAGTGTTCAATTATGAGTACAAGAAAGCCACTTTGAACGGTGTACCAGCCTTATCTTCACTTACTCAGCTTAAGGCTATTCACTTGGAGAAGTTGAATGTG

Ace file of the UniGene uagpf_v2_unigene20032 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18843	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance associated protein (Fragment) n=8 Tax=Pinaceae RepID=Q2VWL9_PICAB	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	cc-nbs-lrr protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3		IPR014011	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 202 aas, your sequence is shorter than subject: 121 - 835

Fln protein: RRDLGCHSIYQILGFMCGRWSGKMILSSC*SLQAEIC*I*QAISGAMEDD*WCAMNFGEAKALLLLFSASKYFLPSFFSSTRKLKVLIVFNYEYKKATLNGVPALSSLTQLKAIHLEKLNV

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTATCAAATACTTGGGTTTATGTGCGGAAGATGGAGTGGCAAGATGATTTTGTCATCTTGTTAGAGCTTGCAAGCAGAAATCTGTTGAATTTAACAAGCAATATCCGGTGCAATGGAAGACGATTAGTGGTGTGCGATGAATTTTGGTGAGGCAAAGGCTTTGCTTTTACTCTTTTCTGCAAGTAAATACTTTCTTCCATCATTTTTTAGTTCCACGAGGAAACTGAAAGTCCTCATAGTGTTCAATTATGAGTACAAGAAAGCCACTTTGAACGGTGTACCAGCCTTATCTTCACTTACTCAGCTTAAGGCTATTCACTTGGAGAAGTTGAATGTG

Fln Alignment:

Contig20032___SGAMEDD*WCAMNFGEAXXXXXXXXXXXXXLPSFFSSTRKLKVLIVFNYEYKKATLNGVPALSSLTQLKAIHLEKLNV
B8LKC3________________TGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain