SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19988

Length: 1966 nt

UniGene Fasta

>uagpf_v2_unigene19988
CGTCGTGACCTTGGCTGTCACTCAATATGTTGAGAAGAGGAGAGCTGATCGTCTATTTTGTTGTGGAGAGCGAAGCAGGGGAGCTCTGCGATTCTTTTTTGCTGGGAAGCTGAAGCTGCTTATTCGCGTTTTTGATTCAGGAATACTTGGTTTTTAGAAAACCATGGGTAAAGAGAAGACCCACATCAATATTGTGGTCATAGGACATGTCGACTCTGGCAAGTCCACCACTACCGGTCATCTTATTTACAAGCTTGGCGGTATCGACAAGCGTGTGATCGAGCGATTTGAGAAGGAAGCTGCGGAAATGAACAAAAGGTCATTCAAGTATGCCTGGGTTCTTGACAAGCTTAAGGCTGAGCGCGAGCGTGGTATTACTATTGACATTGCTCTCTGGAAGTTTGAGACAACCAAGTATTACTGTACCGTTATTGATGCACCAGGCCATCGGGACTTTATCAAGAACATGATTACGGGTACATCACAGGCCGATTGTGCTGTTTTGATTATTGATTCTACCACCGGAGGTTTTGAAGCGGGTATTTCGAAGGATGGACAGACCAGAGAACATGCTCTTTTGGCATTCACTCTAGGAGTGAGACAGATGATTTGTTGTTGTAATAAGATGGATGCTACCAGCCCCAAGTATTCCAAGGCCCGTTATGATGAAATTGTAAAAGAAGTGTCATCATACCTGAAGAAAATTGGGTACAACCCCGATAAAATTCCTTTTGTCCCTATTTCTGGGTTCGAAGGAGATAACATGATTGAAAGATCCACCAACCTGGATTGGTACAAGGGCCCAACTCTGTTGGATGCCCTTGACCAGGTATCTGAGCCGAAGAGACCGTCTGACAAACCCCTTCGATTGCCATTACAAGATGTGTACAAGATTGGTGGTATTGGAACTGTGCCGGTGGGACGTGTTGAAACCGGTGTCATTAAGCCCGGTACGGTTGTAACCTTCGGTCCCACTGGGTTGACAACTGAAGTTAAGTCAGTAGAAATGCATCATGAAGCTCTGTTAGAGGCATTACCCGGTGACAATGTTGGCTTCAATGTCAAGAACGTTGCAGTCAAGGATTTGAAACGTGGGTATGTTGCATCTGACTCCAAAAACGACCCAGCAAAGGAAGCAGCTAGCTTTACCTCTCAAGTAATCATAATGAACCACCCTGGGCAGATTTCGAATGGCTATGCACCTGTGTTGGACTGCCACACCTGCCACATTGCTGTCAAATTTGCTGAAATTATGACAAAGGTCGATAGACGATCCGGTAAAGAACTTGAGAAGGAGCCCAAATTTCTGAAGAATGGAGATGCTGGGTTTATTAAGATGATTCCCTCCAAGCCCATGGTTGTGGAGACATTCTCTGAGTACCCTCCACTGGGTCGTTTTGCTGTGAGAGACATGCGTCAAACGGTTGCTGTTGGAGTCATCAAGGGTGTTGAGAAAAAGGATCCCACTGGTGCCAAGATCACCAAGGCTGCGGCCAAGAAGGGTAAATGAAGCTTGCTGCTACCAAGTACTTTTGTGCAGAGGAAGGAAGACGGTTATGGATACCATACTTCTACGTGGTGTAGAAGCTTGTCTGATTCTGATGCACGAGATTTGGTAGTTAGGGGTTTAGTGGCTCGGCGCATGCAAACATGGGTTCTTGACCGGCGGTGGCAGCATATTCGTAATGCAATTTATTGTTCCTAGCATTTTAGTAATTTGGGCGGGTTTATAGTATTATACAACTTTGTGGGTGAGGGTTTAGTACTGCATCGGATTTTCAAAGATCATTGCAACCGCAATTTAATTGTGGATTTTTATGTTTGTGCATTGTGGAAGACTTTTTATGTGAGCTAAGTTATGAGAATATTGTGTAAAGGTTGTTTACAATGTGATGGTTGGTGTTTTATTGTTCTGGCGTTTACATCGTGTCTTTTTAAAATTATGAAGAAACTTAACGTTGGTACC

Ace file of the UniGene uagpf_v2_unigene19988

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22771	346/360
SustainPine v2.0	sp_v2.0_unigene80440	6/360

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH	-	-	93%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSF0

Fln msg:

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATSPKYSKARYDEIVKEVSSYLKKIGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTVVTFGPTGLTTEVKSVEMHHEALLEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAASFTSQVIIMNHPGQISNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFLKNGDAGFIKMIPSKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGAKITKAAAKKGK*

Protein Length: 450

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATGTTGAGAAGAGGAGAGCTGATCGTCTATTTTGTTGTGGAGAGCGAAGCAGGGGAGCTCTGCGATTCTTTTTTGCTGGGAAGCTGAAGCTGCTTATTCGCGTTTTTGATTCAGGAATACTTGGTTTTTAGAAAACC_-_ATGGGTAAAGAGAAGACCCACATCAATATTGTGGTCATAGGACATGTCGACTCTGGCAAGTCCACCACTACCGGTCATCTTATTTACAAGCTTGGCGGTATCGACAAGCGTGTGATCGAGCGATTTGAGAAGGAAGCTGCGGAAATGAACAAAAGGTCATTCAAGTATGCCTGGGTTCTTGACAAGCTTAAGGCTGAGCGCGAGCGTGGTATTACTATTGACATTGCTCTCTGGAAGTTTGAGACAACCAAGTATTACTGTACCGTTATTGATGCACCAGGCCATCGGGACTTTATCAAGAACATGATTACGGGTACATCACAGGCCGATTGTGCTGTTTTGATTATTGATTCTACCACCGGAGGTTTTGAAGCGGGTATTTCGAAGGATGGACAGACCAGAGAACATGCTCTTTTGGCATTCACTCTAGGAGTGAGACAGATGATTTGTTGTTGTAATAAGATGGATGCTACCAGCCCCAAGTATTCCAAGGCCCGTTATGATGAAATTGTAAAAGAAGTGTCATCATACCTGAAGAAAATTGGGTACAACCCCGATAAAATTCCTTTTGTCCCTATTTCTGGGTTCGAAGGAGATAACATGATTGAAAGATCCACCAACCTGGATTGGTACAAGGGCCCAACTCTGTTGGATGCCCTTGACCAGGTATCTGAGCCGAAGAGACCGTCTGACAAACCCCTTCGATTGCCATTACAAGATGTGTACAAGATTGGTGGTATTGGAACTGTGCCGGTGGGACGTGTTGAAACCGGTGTCATTAAGCCCGGTACGGTTGTAACCTTCGGTCCCACTGGGTTGACAACTGAAGTTAAGTCAGTAGAAATGCATCATGAAGCTCTGTTAGAGGCATTACCCGGTGACAATGTTGGCTTCAATGTCAAGAACGTTGCAGTCAAGGATTTGAAACGTGGGTATGTTGCATCTGACTCCAAAAACGACCCAGCAAAGGAAGCAGCTAGCTTTACCTCTCAAGTAATCATAATGAACCACCCTGGGCAGATTTCGAATGGCTATGCACCTGTGTTGGACTGCCACACCTGCCACATTGCTGTCAAATTTGCTGAAATTATGACAAAGGTCGATAGACGATCCGGTAAAGAACTTGAGAAGGAGCCCAAATTTCTGAAGAATGGAGATGCTGGGTTTATTAAGATGATTCCCTCCAAGCCCATGGTTGTGGAGACATTCTCTGAGTACCCTCCACTGGGTCGTTTTGCTGTGAGAGACATGCGTCAAACGGTTGCTGTTGGAGTCATCAAGGGTGTTGAGAAAAAGGATCCCACTGGTGCCAAGATCACCAAGGCTGCGGCCAAGAAGGGTAAATGA___AGCTTGCTGCTACCAAGTACTTTTGTGCAGAGGAAGGAAGACGGTTATGGATACCATACTTCTACGTGGTGTAGAAGCTTGTCTGATTCTGATGCACGAGATTTGGTAGTTAGGGGTTTAGTGGCTCGGCGCATGCAAACATGGGTTCTTGACCGGCGGTGGCAGCATATTCGTAATGCAATTTATTGTTCCTAGCATTTTAGTAATTTGGGCGGGTTTATAGTATTATACAACTTTGTGGGTGAGGGTTTAGTACTGCATCGGATTTTCAAAGATCATTGCAACCGCAATTTAATTGTGGATTTTTATGTTTGTGCATTGTGGAAGACTTTTTATGTGAGCTAAGTTATGAGAATATTGTGTAAAGGTTGTTTACAATGTGATGGTTGGTGTTTTATTGTTCTGGCGTTTACATCGTGTCTTTTTAAAATTATGAAGAAACTTAACGTTGGTACC

Fln Alignment:

Contig19988___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATSPKYSKARYDEIVKEVSSYLKKIGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTVVTFGPTGLTTEVKSVEMHHEALLEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAASFTSQVIIMNHPGQISNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFLKNGDAGFIKMIPSKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKDP
C0PSF0________________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAILIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALLEASPGDNVGFNVKNVAVKDLKRGFVASDSKNDPAREAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIMTKVDRRSGKELEREPKFLKNGDAGFIKMIPSKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDP

SNPs (tot: 93)

Position	A %	C %	G %	T %	Probability
110	94	5			0.999995
116	94	5			0.999995
117		5	94		0.999995
118		94		5	0.999995
125		3		94	0.941977
128			94	1	0.941977
129	3	96			0.986325
131		1		91	1.0
133		6		93	1.0
134			6	93	1.0
138		6		93	1.0
140		93		4	0.99996
141	93		4	1	0.99996
143		4	95		0.999991
144	93			4	0.99996
145	93	1	4		0.99996
150	1			95	0.911382
151		1	95		0.911382
152	1	3	95		0.911382
153	3			96	0.986325
421		3		96	0.999874
422	96		3		0.999874
432			2	97	0.946738
433	93	2	1	3	0.984088
435		4		95	1.0
437	92	3	1	1	0.988551
444	95			4	0.99997
445		2	97		0.969538
453		3	96		0.983282
474		3		96	0.99245
481	88			9	1.0
483	88	7	1		1.0
486	93			2	0.976545
506		6		93	0.999364
527	4		81	13	1.0
528	81		4	13	1.0
529	4	9	86		0.999642
531		13	4	81	1.0
534		10		90	0.999898
536	90	10			0.999898
586			11	88	0.999937
737		12	87		0.992554
902		11	88		0.923564
905	88	11			0.923564
906			11	88	0.923564
911	88	11			0.923564
917		88	11		0.923564
919			88	11	0.923564
922		11	88		0.923564
923	11		88		0.923564
924		11	88		0.923564
925	88			11	0.923564
927	11		88		0.923564
1075		12		87	0.992554
1077		87		12	0.992554
1078	87		12		0.992554
1079	12		87		0.992554
1080		12		87	0.992554
1082	87			12	0.992554
1083	87			12	0.992554
1086	85	14			0.993533
1088			14	85	0.993533
1090		14	85		0.993533
1092	85	14			0.993533
1093	85			14	0.993533
1096	14			85	0.993533
1145	66	33			0.997452
1148			33	66	0.997452
1150			33	66	0.997452
1155		66		33	0.997452
1156			33	66	0.997452
1157		66	33		0.997452
1158	66	33			0.997452
1159	66			33	0.997452
1163	66	33			0.997452
1181		20	60	20	0.99255
1182		20	80		0.995493
1183			80	20	0.995493
1186	75			25	0.996473
1189		25		75	0.996473
1190		25		75	0.996473
1192		75		25	0.996473
1194	75		25		0.996473
1195	75	25			0.996473
1198			75	25	0.996473
1200	25			75	0.996473
1201	75	25			0.996473
1203		25	75		0.996473
1204	25	75			0.996473
1331	25		75		1.0
1506		9	90		0.999842
1653	90			10	0.999898
1890	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain