SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19968

Length: 1067 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19968

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6603	4/37
SustainPine v2.0	sp_v2.0_unigene23918	17/37
SustainPine v2.0	sp_v2.0_unigene61799	16/37

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Solanum lycopersicum]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	alpha- -glucan-protein synthase	-	-	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 259 - 363

Fln protein: S*PWLSLNQCPPTAHYVVTLAVTQLFFNTLYDPYREGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFNRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQSATLPRECITVQQCYIELSKQVRDKLGAIDPYFQKLGDAMVTWIEAWDELNPTVNHATESEVVSNGPVKTSAN*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAATGCCCTCCAACAGCACATTACGTCGTGACCTTGGCTGTCACTCAATTATTTTTCAATACATTGTATGATCCATACAGAGAGGGCGCAGATTTTGTTCGTGGGTATCCCTTCAGCCTTCGCCATGGAACGCCCACTGCAGTTTCTCATGGCCTCTGGATGAATATCCCTGACTATGATGCCCCCACTCAGCTTGTCAAGCCTTTGGAGCGCAACACCAGGTATGTTGATGCAGTTTTGACAATTCCAAAGGGTACCCTTTTCCCTATGTGTGGAATGAATTTGGCCTTCAATAGGGACTTGATTGGTCCTGCAATGTATTTTGGGCTGATGGGTGATGGGCAGCCAATTGGTCGCTATGACGATATGTGGGCAGGATGGTGTGTGAAAGTTATCTGTGATCACTTGGGATTGGGAGTGAAGACAGGTCTGCCATATATTTGGCACAGCAAGGCCAGTAACCCATTTGTTAACTTGAAGAAAGAGTACAAGGGAATATTCTGGCAAGAAGACATCATTCCCTTTTTCCAATCTGCTACACTTCCAAGGGAATGTATCACTGTCCAGCAGTGCTACATTGAGTTGTCAAAGCAAGTGAGGGACAAACTTGGGGCAATAGATCCATATTTCCAGAAGCTGGGAGATGCCATGGTCACTTGGATTGAGGCTTGGGATGAGCTCAATCCCACTGTCAACCATGCTACAGAATCTGAAGTGGTTTCCAACGGACCAGTTAAGACGTCCGCGAATTAG___CAAAGATCCGCCACATTAATTACTTGCATTTGTCAGATCTGGAGAATGTCTCTTATAATTTAATTCATATTGATTTTTGTAGATATTAGTTTGCATTTTCATCCAGTTAGATAGTAGTAGGGCCTACATTGATATCCTCAGAAACATTTTGTTGGGATGCAATTATTTTTTAGAATCAACCTGCAGTAGCATGCTTGGATGAGTATTTGCATGGATCTGTTTTTCATTCAGTTAAATAATATTAGGTCGTACATGGACATCCCGAGAACAATTAGATGGTGTGCAAGT

Fln Alignment:

Contig19968___TQLFFNTLYDPYREGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFNRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQSATLPRECITVQQCYIELSKQVRDKLGAIDPYFQKLGDAMVTWIEAWDELNPTVNHATESEVVSNGPVKTS
A9NKS5________________TPFFFNTLYDPYRDGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTASNAESN--APNGAAKSA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
52	25			75	0.996473
53	25	75			0.996473
54			75	25	0.996473
56			75	25	0.996473
57	75		25		0.996473
59		75		25	0.996473
62		25	75		0.996473
63		25	75		0.996473
65		25		75	0.996473
66		25	75		0.996473
74	75	25			0.996473
78	75	25			0.996473
91		25		75	0.996473
127			25	75	0.996473
136		25		75	0.996473
160	25		75		0.996473
172		25		75	0.996473
193		25		75	0.996473
217	33			66	0.997452
234			33	66	0.997452
238	33		66		0.997452
256			33	66	0.997452
268	33		66		0.997452
286		66		33	0.997452
289			33	66	0.997452
295		33		66	0.997452
304	66	33			0.997452
323	66	33			0.997452
338		33		66	0.997452
925	88			11	0.923564
926	87			12	0.992554
928	85		14		0.993533
929		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain