SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19956

Length: 1688 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19956

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24247	133/144

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=GTP-binding nuclear protein Ran-A1 gb\|AAA73563.1\| GTP-binding protein [Nicotiana tabacum]	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ran-family small gtpase	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3		IPR018210	-	-
Sma3	Ran GTPase	IPR002041	-	-
Sma3		IPR013753	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2L3

Fln msg:

Fln protein: MALPGQQADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFFCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLSGDPNLHFVESPALAPPEVQIDMATQLQYEADLAAAAAQPLPDDDDDAFDN*

Protein Length: 223

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACAGGGCCAGCAATCCCGAGGCATAATTTGGGTCAAATTTGCCAACAGGAAAAATAAAATAATAATAATTATTCGGCATAACAATAGCGTCGTGTCCTTGTCGTCACTGCAGTCTCCAAGATCTAACGGTCAAAACCCTAGCGTTCATATCAAGCTAAACCCCAGATATTGCACCGCTAAGGAAACAGAGCCCCAGTATCTGAAGGACGTGGCGGATTATTCTTATTTCTTCTTTGGCCTTTCAATTATAATCGGACTTGGAGGGTATTTGGTTAGCAAACGCCCTTTATATCTTCATTCTGTCAGTTACAACGCCTTTCATAACAGGCTCTTCCCAAATTCCATTCAAGTATCAACCCCGCCAGCCCTTCGTCTTCTCTTCATCGATCGTCTGGGCTATAATTATTACTGATCATTCTCATTTCTTTCATTTCTCTAGCA_-_ATGGCTCTTCCTGGCCAGCAGGCAGATTGCCCGAGCTTCAAGCTTGTCATTGTTGGCGATGGAGGCACTGGGAAGACGACATTTGTCAAACGCCATCTTACAGGAGAATTTGAGAAGAAATATGAGCCCACAATCGGGGTTGAGGTTCACCCTCTCGATTTTTTCACTAATTGCGGGAAGATTCGATTTTTCTGTTGGGACACGGCTGGTCAAGAGAAGTTCGGTGGCCTGCGAGATGGTTACTACATTCATGGCCAGTGTGCTATAATCATGTTTGATGTTACTGCACGTTTGACTTACAAAAATGTACCAACCTGGCACAGAGATCTTTGCAGGGTATGTGAGAATATTCCTATTGTTCTTTGTGGGAACAAGGTTGATGTGAAGAACAGACAAGTTAAAGCCAAGCAAGTTACTTTCCACAGAAAAAAGAATCTTCAATATTATGAAATATCGGCTAAAAGTAATTACAATTTTGAGAAGCCATATCTTTATCTTGCACGGAAACTCTCTGGGGATCCCAACCTTCATTTCGTGGAGTCACCTGCTCTTGCTCCACCAGAGGTTCAGATTGATATGGCTACACAACTGCAGTATGAGGCAGATCTTGCAGCTGCTGCAGCACAGCCTCTCCCTGATGACGACGATGATGCTTTTGACAATTGA___GAGCTAAATCTAGCTATGGTAGGGTTCTGTTCTTAGATAACGACATAGTTTAATACTTTTATCGGCTATGTTGTTCAAATATCATCAGTTGTCTTTCTCAATGAAGCCCTTTTTTTGTCAATTTTGATTTTTTAAGTGTGAGCCAATGACTCAAGTGGGATGCCAATTTAACAATCTGGCATTCTAGTTTATTCTCTCATGGCATAGTCTTGTAAACAAAGCATGCTGATTTTGCTTAACTACAAAATTCGCTTAGCTGTGTATGACTTTTGACTTGTTGCTTTACCACGATACAACTATATGTTTAATTATCATTTTGCAAGGGCTGAGGGAATATTTGATGTTGTTTCATAGCAGATATCTTCCTCAATGATAATGGCATGTTCTTAGATAGTTGTGATTTTTTAAGGACGGGTTGTTATTTGGCCAATGATTATTGTAGTATGCTGATGTGTAGTTGATTCTGTCATGGCATGGTATCGTAAACTTTGTAGGAATTCTGGTATTGCTAAATTACAATGCTTCATCTTTTTATATGGGTTTTGTCATGGCATTG

Fln Alignment:

Contig19956___MALPGQQADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFFCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLSGDPNLHFVESPALAPPEVQIDMATQLQYE
A9P2L3________________MALPGQQADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPYLYLARKLSGDPNLHFVESPALAPPEVQIDMATQLQYE

SNPs (tot: 121)

Position	A %	C %	G %	T %	Probability
199	66		33		0.997452
200		66		33	0.997452
203		66		33	0.997452
204			33	66	0.997452
206	66	33			0.997452
207		33	66		0.997452
208			66	33	0.997452
209	66			33	0.997452
210	66		33		0.997452
211	66		33		0.997452
213	66			33	0.997452
216	66	33			0.997452
217	33		66		0.997452
219		66		33	0.997452
221	33	66			0.997452
234		33	66		1.0
236	66	16		16	0.988813
237		83		16	0.994512
238		16	66	16	0.988813
239			50	50	1.0
240		16	83		0.994512
241	33		66		1.0
243			66	16	0.988813
244		50	50		1.0
245	83			16	0.994512
247		16	16	66	0.988813
248	83		16		0.994512
249	16	16		66	0.988813
251		66	16		0.988813
253		11		77	0.968132
254	88			11	0.923564
255		11		88	0.923564
257		11		88	0.923564
258	11	88			0.923564
273	90	10			0.90298
274	90		10		0.90298
276		10		90	0.90298
277	90		10		0.90298
279	90		10		0.90298
281		10		90	0.90298
283			90	10	0.90298
285	90		10		0.90298
289		10	90		0.90298
290	10		90		0.90298
291	90	10			0.90298
292			90	10	0.90298
293		10	90		0.90298
294	10		90		0.90298
319		20		80	1.0
320	66		33		1.0
323		13	20	66	1.0
325		80	20		1.0
328		20		80	1.0
329		20		80	1.0
330		80		20	1.0
333			20	80	1.0
335	80			20	1.0
338		20		80	1.0
342	80			20	1.0
344	13		80		0.999961
345	6	80		13	0.999961
346		80		20	1.0
390		44	51	3	1.0
391			48	51	1.0
392		51	3	44	1.0
393		89	10		1.0
394	41	3		55	1.0
395			55	44	1.0
396	10	41	41	6	1.0
397		58	41		1.0
403	3		13	82	1.0
408	14			85	1.0
411		10		89	1.0
412	10	89			1.0
493			93	6	0.999153
625		83		16	0.999991
667		11		88	0.999937
669			88	11	0.999937
673	88			11	0.999937
674		88		11	0.999937
686	88	11			0.999937
687			88	11	0.999937
688	88	11			0.999937
864	88			11	0.999937
866	88		11		0.999937
867	88	7		3	0.999079
870		8		92	0.999718
872	92			8	0.999718
877	92			8	0.999718
958		12		87	0.999964
959	81		18		1.0
962	6		12	81	0.999943
964			12	87	0.999964
966	6	12		81	0.999943
973	88			11	0.999937
975	11	5	83		0.999887
976		11	83	5	0.999887
977	83			16	1.0
978	83	11	5		0.999887
1020	10	89			1.0
1021		10		89	1.0
1023			6	93	0.999453
1027		6		93	0.999453
1028		82		17	1.0
1029		93		6	0.999453
1030	93		6		0.999453
1031		82	6		1.0
1033	82			17	1.0
1034		10	89		1.0
1035	93			6	0.999453
1036		6	86		0.995852
1037	6		89	3	0.998304
1038		6		93	0.999453
1065	93	6			0.99903
1081		5		94	0.998894
1245		16		66	0.999991
1248		88		11	0.923564
1490	61		38		1.0
1538	20			20	0.999999
1546	66			33	1.0
1620		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
83	94	AAT AAT AAT AAT	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain