SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19874

Length: 1043 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19874

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23451	37/72
SustainPine v2.0	sp_v2.0_unigene61481	26/72
SustainPine v2.0	sp_v2.0_unigene62360	2/72
SustainPine v2.0	sp_v2.0_unigene79012	1/72

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S18 [Arabidopsis thaliana] ref\|NP_192718.1\| 40S ribosomal protein S18 [Arabidopsis thaliana] ref\|NP_564434.1\| 40S ribosomal protein S18 [Arabidopsis thaliana] ref\|XP_002872461.1\| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	pointed first leaf	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S13	IPR001892	-	0.0	-
Sma3	Ribosomal protein S13, conserved site	IPR018269	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 94)

Position	A %	C %	G %	T %	Probability
120	87	12			0.992554
125			12	87	0.992554
126		62		37	1.0
128	12			87	0.992554
129	87	12			0.992554
130	87	12			0.992554
132	62			37	1.0
133		87	12		0.992554
134		87	12		0.992554
136	87			12	0.992554
139	12		87		0.992554
140		37		62	1.0
143		62	37		1.0
164		55	44		1.0
185		15	84		0.999986
186	76		23		1.0
188		15		84	0.999986
190	7	69		23	1.0
193	76	23			1.0
194		15		84	0.999986
195		7	76	15	0.999983
196	84			15	0.999986
197	30		61		1.0
200		15	84		0.999986
202			15	84	0.999986
206	84			15	0.999986
227		30		69	1.0
269			12	87	0.999964
274		12		87	0.999964
276	87			12	0.999964
277	87			12	0.999964
280		12	87		0.999964
281	87			12	0.999964
282	87		12		0.999964
284		12		87	0.999964
285	12		87		0.999964
286		12	87		0.999964
320		75		25	1.0
359	88			11	0.999937
361			11	88	0.999937
365		11	88		0.999937
370	85			4	0.999726
373	85	14			1.0
374		90		9	0.999872
375		85	9	4	0.999726
377		9	90		0.999872
380		9	90		0.999872
401	78		21		1.0
418	84	7			0.99801
419			7	92	0.999664
423		8		92	0.999718
424	8			92	0.999718
425		4	8	88	0.999262
427		8	4	88	0.999262
428	92			8	0.999718
429	88	8	4		0.999262
430	84		4	12	1.0
439	92	8			0.999718
448	88	11			1.0
450		7	92		0.999602
451	92		7		0.999602
454	11		88		1.0
457			92	7	0.999602
458	92			7	0.999602
459	92		7		0.999602
460		92	7		0.999602
462	92			7	0.999602
463		92	7		0.999602
468		7	92		0.999602
470		7	92		0.999602
471	7		92		0.999602
476	36	60		2	1.0
515		52	47		1.0
535	92		7		0.999999
536		92		7	0.999999
541	7		92		0.999999
542		7		92	0.999999
566			42	57	1.0
569			57	42	1.0
587	29		70		1.0
596			67	32	1.0
611		65		34	1.0
634	32		68		1.0
653	15		85		1.0
656	15		84		1.0
671	72		27		1.0
684		20		80	0.999996
719			16	83	0.999991
732		16		83	0.999991
743	83		16		0.999991
750		83		16	0.999991
843		14		85	0.993533
865		76	23		1.0
877	23		76		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain