SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19809

Length: 1091 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19809

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27050	24/43
SustainPine v2.0	sp_v2.0_unigene30847	18/43

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana] gb\|AAF79453.1\|AC025808_35 F18O14.8 [Arabidopsis thaliana] gb\|AAM65662.1\| unknown [Arabidopsis thaliana] gb\|ABG25079.1\| At1g19360 [Arabidopsis thaliana] dbj\|BAF00917.1\| hypothetic	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	nucleotide-diphospho-sugar transferase family protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL91

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 253 - 432

Fln protein: S*PWLSLIILLLHWMTRLLWLSLRGVPVYRRDPAAAISKTVGKAGDNHAVSGLKFHLLREFLQLGYSVLLSDVDIVYLQNPFNFLYRDCDVESMTDGHSNMTAYGYDDVFDDPPMGWSRHDLTWHALTLNVTQFFYIRPTIPSIELLDRVVDRLSKEIAWDQAVFNELLFFPSHPGYEGLHASKRAMDYYLFLNSKVLFTKFRKEPEMPRYKPVIVHINYHPDKLNRMKAVVEYYVRGKKEALKPFPDGSDW*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATCTTGTTGTTGCACTGGATGACTCGTCTGCTTTGGCTGTCACTCAGAGGTGTTCCGGTGTACAGAAGAGATCCAGCTGCTGCGATATCAAAAACTGTCGGAAAAGCAGGAGACAACCATGCAGTTTCAGGCCTGAAATTCCATTTACTGAGGGAGTTTTTGCAGCTGGGATACAGTGTATTACTCTCTGATGTCGATATTGTCTATCTGCAGAACCCATTTAATTTTCTTTACAGGGACTGTGATGTTGAATCCATGACAGATGGACACTCAAATATGACTGCATATGGGTACGATGATGTCTTCGATGATCCTCCGATGGGTTGGTCTCGTCATGACCTGACCTGGCACGCACTCACCTTGAATGTCACTCAGTTTTTCTACATCAGGCCTACCATTCCTTCAATCGAGCTTTTGGATCGAGTTGTAGATCGACTTTCCAAGGAGATTGCTTGGGATCAGGCAGTCTTTAATGAGTTGCTGTTTTTCCCCTCTCATCCAGGTTATGAAGGGCTTCATGCATCAAAGCGAGCAATGGATTATTATCTCTTTTTGAATAGCAAAGTGCTGTTTACAAAATTCAGGAAGGAGCCAGAAATGCCCCGCTACAAACCAGTTATTGTTCATATCAATTATCATCCGGATAAGCTTAATAGAATGAAGGCCGTTGTCGAGTATTATGTTCGTGGAAAGAAAGAAGCTCTTAAACCTTTTCCTGATGGTTCTGATTGGTGA___TGAATGAGCGAGACTTAGTTGGAGGTTAAGCAACATGAGAAGATTTGTATTCTTAGCTTTTCTTCCCCCCTTTTTGGCAATCTCCAGTGCCCGCAGTAAAGTGGAAAGTCCATTATATTTTGGCTGTAAAGGCCTCTGAAATTGTGTTGTTAAGTATTGTGACAATTTCACAGTCCATGGGTTTTTTTTGACAGTCTAGGGTTGCCAATTCATGTTTTGAGCTTTTATACGGTCTTTCATTGCTGCCCAAAGAATTTGAAACCCATGTAGTTTGCTTTTCTGCAGAAGATCCTGTTGTCTTGTTGTGGATTTCTAAATTGCAGAGTCAAA

Fln Alignment:

Contig19809___RGVPVYRRDPAAAISKTVGKAGDNHAVSGLKFHLLREFLQLGYSVLLSDVDIVYLQNPFNFLYRDCDVESMTDGHSNMTAYGYDDVFDDPPMGWSRHDLTWHALTLNVTQFFYIRPTIPSIELLDRVVDRLSKEIAWDQAVFNELLFFPSHPGYEGLHASKRAMDYYLFLNSKVLFTKFRKEPEMPRYKPVIVHINYHPDKLNRMKAVVEYYVRGKKEALKPFPDGSDW
B8LL91________________RGVPVYRRDPADAISKTVGKTGDNHAISGLKFHLLREFLQLGYSVLLSDVDIVYLQNPFNFLYRDCDVESMTDGYSNMTAYGYDDVSDDPSMGWSRYAHTMRIWVFN-SGFFYIRPTIPSIELLDRVVDRLSKENAWDQAVFNELLFFPSRPGYEGLHASRRAMDYYLFLNSKVLFTKFRKEPKMPSYKPVIIHINYHPDKLPRMKAVVEYYVHGKKEALKPFPDGSEW

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
186		20	80		0.995493
187			20	80	0.995493
189		20		80	0.995493
190			20	80	0.995493
195		20	80		0.995493
198			80	20	0.995493
201	80	20			0.995493
203	80			20	0.995493
206		20	80		0.995493
209		20		80	0.995493
334			25	75	0.996473
346		75		25	0.996473
347		75	25		0.996473
349	75	25			0.996473
354	25		75		0.996473
355		25	75		0.996473
357		25		75	0.996473
358	25		75		0.996473
375	50			50	1.0
376		50	50		1.0
379	50	50			1.0
380	50			50	1.0
384	50	50			1.0
385			50	50	1.0
387	42			57	1.0
388		42		57	1.0
389	57			42	1.0
390		42	14	42	1.0
391			42	57	1.0
392		42	57		1.0
393	57		42		1.0
408		16	83		0.994512
684		12	87		0.999964
685	11	88			0.999952
686		11	5	82	0.999919
688	82	17			1.0
784	70		30		1.0
836		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain