SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19803

Length: 789 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19803

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11940	38/40

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3406 multi-domain protein	-	-	67%
FL-Next	sp=Translocase of chloroplast 120, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to chloroplast	GO:0045036	Biological Process	79%
Blast2go	GTP binding	GO:0005525	Molecular Function	79%
Blast2go	hydrolase activity, acting on acid anhydrides	GO:0016817	Molecular Function	79%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	79%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3	Chloroplast protein import component Toc86/159	IPR005690	-	-
Sma3	AIG1	IPR006703	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
231	80		20		0.995493
232	20			80	0.995493
234		20	80		0.995493
235			80	20	0.995493
240	80			20	0.995493
241	80		20		0.995493
244	20			80	0.995493
349	66		33		1.0
350			66	33	1.0
352			33	66	1.0
354		66	33		1.0
356		40	60		1.0
359	60		40		1.0
364		40		60	1.0
365	40		60		1.0
366	60	40			1.0
368	40			60	1.0
396	86	13			1.0
403	4	8	86		0.999539
406			91	8	0.999807
407		8	91		0.999807
408	8	4		86	0.999539
453	82	14		3	1.0
456			14	85	1.0
458			14	85	1.0
471	7			92	0.999602
786			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain