SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19684

Length: 1733 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19684

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9993	27/55
SustainPine v2.0	sp_v2.0_unigene11110	17/55
SustainPine v2.0	sp_v2.0_unigene63922	5/55
SustainPine v2.0	sp_v2.0_unigene64881	4/55
SustainPine v2.0	sp_v2.0_unigene68576	2/55

Source	Descriptions	Term	Type	Identity
AutoFact	tryptophan aminotransferase related 2 [Arabidopsis thaliana] ref\|NP_974608.1\| tryptophan aminotransferase related 2 [Arabidopsis thaliana] gb\|AAK92714.1\| putative alliin lyase [Arabidopsis thaliana] gb\|AAM14394.1\| putative alliin lyase [Arabidopsis thalia	-	-	56%
FL-Next	sp=Tryptophan aminotransferase-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	alliin lyase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Tryptophan transaminase.	EC:2.6.1.27	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tryptophan metabolism	00380		0.0	71%
Blast2go	Metabolic pathways	01100		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	gynoecium development	GO:0048467	Biological Process	71%
Blast2go	indoleacetic acid biosynthetic process	GO:0009684	Biological Process	71%
Blast2go	positive gravitropism	GO:0009958	Biological Process	71%
Blast2go	primary root development	GO:0080022	Biological Process	71%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	71%
Blast2go	cotyledon development	GO:0048825	Biological Process	71%
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	71%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	71%
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	71%
Blast2go	binding	GO:0005488	Molecular Function	71%
Blast2go	L-tryptophan:pyruvate aminotransferase activity	GO:0080097	Molecular Function	71%
Blast2go	L-tryptophan:2-oxoglutarate aminotransferase activity	GO:0050362	Molecular Function	71%
Blast2go	carbon-sulfur lyase activity	GO:0016846	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	EGF-like, alliinase	IPR006947	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q94A02

Fln msg: Overlapping hits, possible frame ERROR between 1041 and 1040, Unexpected STOP codon at 3' end. Distance to subject end: 83 aas, your sequence is shorter than subject: 370 - 440

Fln protein: MAPPKLRSRHKLNMNHLVKEGKQQQQHLENKGYFPFSLMPMPGSMNSKYLICLSMAVNVCLLTILLYEKNYHPIPIPRSLWGKGKSLVNNNLCVPPQEEDKANTACAVNDLRHNISVATEGGHATCSGNGYYVSNSPSVPALSGGFCKCHACFTDRNCSTLVSDCVLNVDHGDPTMFESFWINTGQKSTTVIMGWQRMSYFSDVGNVCWFLEPELAxxEIRSLHSLAGNAVTKGRHIVVGTGATQLFQAALYALSPPGRSRPTNVISAAPYYSSYPLETDYLKSEIYKWAGDAWTYKQTSDEDYYIELVTSPNNPDGFTREAVVNGSGPVIYDLAYYWPHYTPITAPADQDLMLFTLSKITGHAGSRIG*

Protein Length: 371

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGACTTTCTTTTCGTGTATGGTCTCAACGTGCTTTGTGTGAATGGCTTGAGTATGTCAGTGTCATAATTTCCACCTTAATGGGCACAAATAAAGGGAAAACAATACAGGTTTTGCGGCAATAGAATATCGTCCGAGAATCAATGGAATGAGAGAACGCATTCAGCATCATCCTGGTCAACAAAGTCAAAATAGGCTGGAGGGAAACATGCAGGAATATGTAATGTAAATGGGGTTTACATTGGACACTTAGTGTATTTTGTTGCTTCTCTTACCACAATGCTGAACATCATTCCCTCGTTCTCTCTGAGTGAAGGCTAGGCAGAAGTATGGGTCGACCATAGCTTTGAGATTCAGATTCAGAATAC_-_ATGGCACCCCCAAAGCTTAGAAGCAGACATAAGCTCAACATGAACCATTTAGTAAAAGAAGGAAAGCAGCAGCAGCAGCATTTGGAAAATAAGGGTTACTTTCCCTTCTCTTTAATGCCAATGCCAGGCAGTATGAATAGCAAATACTTAATATGTCTTTCCATGGCAGTGAATGTCTGTCTTCTCACTATTTTGTTATATGAGAAAAACTACCATCCCATTCCAATACCCAGAAGCTTGTGGGGAAAAGGAAAATCATTGGTTAATAACAACTTATGTGTGCCTCCACAAGAAGAAGACAAAGCAAACACAGCATGTGCAGTAAATGATCTGAGGCATAATATTTCAGTTGCTACTGAAGGAGGTCACGCAACATGCTCTGGCAATGGCTACTATGTCAGTAATTCTCCTTCTGTGCCAGCTTTAAGTGGTGGTTTCTGTAAATGCCACGCTTGCTTCACAGACCGAAACTGTTCCACTCTTGTCTCCGACTGCGTCCTCAACGTTGACCATGGAGACCCGACAATGTTTGAATCATTTTGGATCAACACCGGCCAAAAGAGTACGACTGTGATTATGGGTTGGCAGCGGATGAGCTACTTTTCAGATGTGGGAAATGTATGCTGGTTTTTAGAGCCAGAATTAGCGxxxxxxGAGATCAGATCTCTTCACAGTCTTGCAGGAAATGCCGTAACAAAAGGCCGCCATATAGTGGTAGGTACAGGTGCAACACAGCTCTTTCAAGCTGCACTGTATGCCTTATCACCCCCAGGTCGTTCCAGACCAACAAATGTTATTTCTGCGGCACCCTACTACTCGTCTTATCCATTGGAAACAGACTATTTGAAATCAGAGATCTACAAATGGGCTGGTGATGCCTGGACGTACAAGCAGACCTCAGATGAAGATTACTACATTGAGTTGGTAACTTCTCCTAATAACCCTGATGGGTTTACCAGGGAAGCAGTTGTAAATGGCTCTGGACCAGTTATATACGATTTAGCCTATTACTGGCCACATTACACCCCCATCACTGCTCCCGCAGATCAGGATCTTATGTTGTTCACGTTATCTAAAATTACAGGTCATGCAGGAAGCCGCATTGGGTAAGTAATGTTTAAAGCCTTTTACAACTATATGCAAATTGCTGTGCCACCTCCTCTCTCCCACTTGCAACTTGAATGTTGACAAAGCTTGTACTCTGTTTTTCTGTGGCTCTATGTGTATTTTCGCTTTTGTGTGTTGGCAGGCTAGGAGTTTTACTGGTAAGTTTGCATATCATATTCATTTTTTCTGACAGCTTGGCTCCACAGATTGTCTTTCAGCAAACAATGTTTAGAGATAG

Fln Alignment:

Contig19684___DCVLNVDHGDPTMFESFWINTGQKSTTVIMGWQRMSYFSDVGNVCWFLEPELAxEIRSLHSLAGNAVTKGRHIVVGTGATQLFQAALYALSPPGRSRPTNVISAAPYYSSYPLETDYLKSEIYKWAGDAWTYKQTSDEDYYIELVTSPNNPDGFTREAVVNGS-GPVIYDLAYYWPHYTPITAPADQDLMLFTLSKITGHAGSRIG*VMFK
Q94A02________________DRIINLKFGDPTVYERYWQENGEVTTMVIPGWQSLSYFSDENNLCWFLEPELAxEIVRVHKVVGNAVTQDRFIVVGTGSTQLYQAALYALSPHDDSGPINVVSATPYYSTYPLITDCLKSGLYRWGGDAKTYK---EDGPYIELVTSPNNPDGFLRESVVNSTEGILIHDLAYYWPQYTPITSPADHDVMLFTASKSTGHAGIRIGWALVK

SNPs (tot: 89)

Position	A %	C %	G %	T %	Probability
129	66		33		0.997452
177			75	25	0.996473
246	75			25	0.996473
274			20	80	0.999996
276	50	20	10		0.999999
280	10	20		60	0.999999
281	50	40		10	1.0
282	10	10	10	70	0.922578
284		20		80	0.999996
285	10	10	10	60	0.904667
286	10	10	70		0.922578
287		30		70	1.0
288	10	20		70	0.999998
289	20	10	70		0.999998
291		10		90	0.90298
292	20			80	0.999996
631		10		90	0.90298
635		10	90		0.90298
636		11	88		0.923564
637			88	11	0.923564
638	88			11	0.923564
639	88		11		0.923564
640	88		11		0.923564
641	88	11			0.923564
642			88	11	0.923564
644	77			11	0.968132
645	88	11			0.923564
647	88	11			0.923564
732	81	18			0.999994
733	81		18		0.999994
735	81		18		0.999994
737			18	81	0.999994
738	18			81	0.999994
740	81	18			0.999994
741			81	18	0.999994
743			18	81	0.999994
748		81	18		0.999994
750		20	80		0.999996
752	80	20			0.999996
753			80	20	0.999996
754		20	80		0.999996
1102	25			75	0.996473
1150	75	25			0.996473
1151		75		25	0.996473
1159		88	11		0.923564
1160		88		11	0.923564
1162	88		11		0.923564
1163			88	11	0.923564
1165	11			88	0.923564
1167		11	88		0.923564
1170		88	11		0.923564
1172	88			11	0.923564
1173		33	66		1.0
1174	88			11	0.923564
1176	11	88			0.923564
1177	88	11			0.923564
1178	88			11	0.923564
1184	44		55		1.0
1195		44	55		1.0
1220			44	55	1.0
1224	55			44	1.0
1254	55		44		1.0
1260		62	37		1.0
1270	37	62			1.0
1274	62		37		1.0
1290		87		12	0.992554
1324		20		80	0.999996
1325		90	10		0.90298
1326	10	90			0.90298
1327		10		90	0.90298
1328	90	10			0.90298
1329	88			11	0.923564
1330		22		77	0.999999
1331	88		11		0.923564
1332	88		11		0.923564
1334		88		11	0.923564
1335		88	11		0.923564
1337		11	88		0.923564
1339		11		88	0.923564
1340			88	11	0.923564
1341		11	88		0.923564
1342	11		88		0.923564
1366	10			90	0.90298
1369		90	10		0.90298
1432		88		11	0.923564
1447	14			85	0.993533
1451		14		85	0.993533
1460			14	85	0.993533
1470			14	85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
455	470	AGC AGC AGC AGC AGC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain