SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19629

Length: 724 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19629

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28185	20/21

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleic acid binding NABP [Medicago truncatula]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	pumilio homolog 2-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF632	IPR006867	-	-
Sma3	Domain of unknown function DUF630	IPR006868	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Nucleic acid binding NABP	IPR012940	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
220	87		12		0.992554
221		12	87		0.992554
223		12	87		0.992554
224	12	87			0.992554
229	87	12			0.992554
251		11		88	0.923564
252	88		11		0.923564
254		11	88		0.923564
256	88			11	0.923564
257	88		11		0.923564
261	88	11			0.923564
265	88		11		0.923564
267		11		88	0.923564
271	11			88	0.923564
273			88	11	0.923564
274		11		88	0.923564
275	11		88		0.923564
308	90	10			0.90298
309			10	90	0.90298
314	90	10			0.90298
322	88			11	0.923564
323	88	11			0.923564
324	11	88			0.923564
359	85	14			0.999981
360	85		14		0.999981
363	85			14	0.999981
366	85	14			0.999981
368			12	68	1.0
370		12	68	18	1.0
371			50	50	1.0
374	87	12			0.999964
375		12		87	0.999964
376	75	12			0.999931
377			87	12	0.999964
379			13	86	0.999973
380		13	86		0.999973
381	86	13			0.999973
382		6	73	13	0.999956
384		13		86	0.999973
385	6	13		80	0.999961
386	10	10	78		0.999769
387	5	10	84		0.999846

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain