SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19566

Length: 2062 nt

UniGene Fasta

>uagpf_v2_unigene19566
CGTCGTGACCTTGGCTGTCACTCAATAATTGAGTAATTCGGCTAAAACTACCACACCTGTCGTTACCTTGGGTGTCCTTGTCCACGTCGTGACCTTGGCTGTCACGTCAGGTTTTAAAGGCAGTGGAAAAGAAGGCCAGTCTCGCCGTGCCGAGCAAGACGGGTTGACGACGGGGGATCGAATCCTGGGGACTAAAAGCTACAACTAAGATTTCCATCGAACGGCTTCTCCTGCAAGCTTTAACGTCAAAATCGTCTTCCGTGGCCGTGGATTGTATGCATCATACCTGTACACAACACTTCATCAATCCTGATGTTGTTTTGGAATGTTATTTGATTGATTTTGTAAGGTTATTATCGAAGCCTGAAAGTGGAGTACAATGTAACCCTAGGGGGCAAACGGGCGCCTTCTGGCAAGACTTTATTTTTGTTTTAGGGTTAAATTCTGCTGTGCGATCGCTGCAAAGATTCAACTCTATCTGGTTTTCGCACTTGACTTTTTGTGTGATTCGCTGTTTCTGAAACTTTGGAAATCCTAGATCTTGTCTTGGCTTCTGAAACTTGAAACGGTTCATAATTCTAATTGTCCTTTTTTTTTCGTTTCCGGTTTGATTTGCGCAGGGGTTTCCCGCCCTTTTGTCAGGAAATTTTCTTAATGAGTTTGGGCTTATCAGACCCAGCCTTGGTTTCCTGTCATTCGGGAAACAAGGGCGAATTTTTTTTCTGGACGTTGTTGTTCTGCGTTCCTAAAGTGGCCCAATTTGTTGCTGTATTTAAAATTAAAGCTGTTCCTGGTCAGTGTTCATTTACGTAGCCATGGTATTACGGGGGGGTTTGCGTGTTCCGCTATCCCGCAAATCAAGGTCGGTCCTCTTAGGACACCTGATACTGCCTCTAGATTCTTTATCAACTGAACCGGTTAAGGGATCTGACAGTGAGAATGGAGAGTTTGATTTTTCTGAGGTGTTTGGTCCCATTCCGTCGGACCAGCCTTCACCTGCCCAAGCGAAGGCTTCAACGAAATGGTCGGCCTCGGGGTTTCTTGGAAGTGACGATCCCGAGGTGATTTATAATCGATCTCATTCACTGGTTGGTCCCTCGCCTCGTCCCGGTATTGATAGGCAGCTCAGCAAGTTCAGCGAAGAGGAAATTTGCAACTCTGGTGAGATATCCTCCAAGACTGAAGAGACGGGGCCTCTCTCCTCAGCACATGATGAATTCCAGGCTTCTTTGTGTGAAGACTCCGATGGGGTTAATTCCGGTCCCGATGAAGAGAAGAGTTATGGTGGCGAGAAGCTTGGACCACAGGATTTCGAACTCCTAAGGGTGGTTGGACAGGGTGCATTTGGAAAGGTGTTCCAAGTGAGGAGAAAGGGAACAAATGTAATTTATGCTATGAAAGTCATGAAAAAGGATAAAATTATTACAGGCAATCATGTAGACTATATGAAAGCAGAGAGGGATATTCTCACAAAGATAGTTCACCCTTTCATTGTTCAGCTGCGATACTCGTTTCAGACGAAATCTAAATTATATTTAATTCTGGATTTTATAAATGGAGGACATCTTTTCTTTCAGCTTTATCGACAAGGACTCTTCAGTGAGGAATTGGCTCGGGTTTATGCTGCAGAAATAGTTTCTGCTGTGTCGCATCTTCACAAAAATGGTATAATTCACCGGGATCTGAAACCTGAGAACATTCTTCTAGATGCTGAAGGGCATGTTATGTTGACTGATTTTGGCCTGGCCAAGGAAGTCAGTGAATCAATGCGATCCAATTCTATGTGTGGGACTACAGAGTACATGGCACCTGAGATTATACTTTCTAAAGGCCATGATAAAGCTGCTGATTGGTGGAGTGTGGGAATTCTTTTATTTGAAATGCTGACTGGTCAGCCTCCCTACACCAATAATAACAGGCAGAAGCTTCAAGAGAAAATTATCAAGGAGAAAATTAAGCTACCATCATATCTGACTTCTGAAGTTCATTCATTGCTCAAAGGATTGCTGCAGGAGGATCCTGTAAGCGCCTTGGGAGTGGAGTGAATGGCAGTGATGAAATT

Ace file of the UniGene uagpf_v2_unigene19566

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10029	65/89
SustainPine v2.0	sp_v2.0_unigene17072	18/89
SustainPine v2.0	sp_v2.0_unigene61818	1/89
SustainPine v2.0	sp_v2.0_unigene63962	1/89

Source	Descriptions	Term	Type	Identity
AutoFact	putative ribosomal-protein S6 kinase-like protein [Solanum lycopersicum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	74%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	74%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	74%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	74%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2E8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, your sequence is longer than subject: 410 - 192

Fln protein: MVLRGGLRVPLSRKSRSVLLGHLILPLDSLSTEPVKGSDSENGEFDFSEVFGPIPSDQPSPAQAKASTKWSASGFLGSDDPEVIYNRSHSLVGPSPRPGIDRQLSKFSEEEICNSGEISSKTEETGPLSSAHDEFQASLCEDSDGVNSGPDEEKSYGGEKLGPQDFELLRVVGQGAFGKVFQVRRKGTNVIYAMKVMKKDKIITGNHVDYMKAERDILTKIVHPFIVQLRYSFQTKSKLYLILDFINGGHLFFQLYRQGLFSEELARVYAAEIVSAVSHLHKNGIIHRDLKPENILLDAEGHVMLTDFGLAKEVSESMRSNSMCGTTEYMAPEIILSKGHDKAADWWSVGILLFEMLTGQPPYTNNNRQKLQEKIIKEKIKLPSYLTSEVHSLLKGLLQEDPVSALGVE*

Protein Length: 411

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATTGAGTAATTCGGCTAAAACTACCACACCTGTCGTTACCTTGGGTGTCCTTGTCCACGTCGTGACCTTGGCTGTCACGTCAGGTTTTAAAGGCAGTGGAAAAGAAGGCCAGTCTCGCCGTGCCGAGCAAGACGGGTTGACGACGGGGGATCGAATCCTGGGGACTAAAAGCTACAACTAAGATTTCCATCGAACGGCTTCTCCTGCAAGCTTTAACGTCAAAATCGTCTTCCGTGGCCGTGGATTGTATGCATCATACCTGTACACAACACTTCATCAATCCTGATGTTGTTTTGGAATGTTATTTGATTGATTTTGTAAGGTTATTATCGAAGCCTGAAAGTGGAGTACAATGTAACCCTAGGGGGCAAACGGGCGCCTTCTGGCAAGACTTTATTTTTGTTTTAGGGTTAAATTCTGCTGTGCGATCGCTGCAAAGATTCAACTCTATCTGGTTTTCGCACTTGACTTTTTGTGTGATTCGCTGTTTCTGAAACTTTGGAAATCCTAGATCTTGTCTTGGCTTCTGAAACTTGAAACGGTTCATAATTCTAATTGTCCTTTTTTTTTCGTTTCCGGTTTGATTTGCGCAGGGGTTTCCCGCCCTTTTGTCAGGAAATTTTCTTAATGAGTTTGGGCTTATCAGACCCAGCCTTGGTTTCCTGTCATTCGGGAAACAAGGGCGAATTTTTTTTCTGGACGTTGTTGTTCTGCGTTCCTAAAGTGGCCCAATTTGTTGCTGTATTTAAAATTAAAGCTGTTCCTGGTCAGTGTTCATTTACGTAGCC_-_ATGGTATTACGGGGGGGTTTGCGTGTTCCGCTATCCCGCAAATCAAGGTCGGTCCTCTTAGGACACCTGATACTGCCTCTAGATTCTTTATCAACTGAACCGGTTAAGGGATCTGACAGTGAGAATGGAGAGTTTGATTTTTCTGAGGTGTTTGGTCCCATTCCGTCGGACCAGCCTTCACCTGCCCAAGCGAAGGCTTCAACGAAATGGTCGGCCTCGGGGTTTCTTGGAAGTGACGATCCCGAGGTGATTTATAATCGATCTCATTCACTGGTTGGTCCCTCGCCTCGTCCCGGTATTGATAGGCAGCTCAGCAAGTTCAGCGAAGAGGAAATTTGCAACTCTGGTGAGATATCCTCCAAGACTGAAGAGACGGGGCCTCTCTCCTCAGCACATGATGAATTCCAGGCTTCTTTGTGTGAAGACTCCGATGGGGTTAATTCCGGTCCCGATGAAGAGAAGAGTTATGGTGGCGAGAAGCTTGGACCACAGGATTTCGAACTCCTAAGGGTGGTTGGACAGGGTGCATTTGGAAAGGTGTTCCAAGTGAGGAGAAAGGGAACAAATGTAATTTATGCTATGAAAGTCATGAAAAAGGATAAAATTATTACAGGCAATCATGTAGACTATATGAAAGCAGAGAGGGATATTCTCACAAAGATAGTTCACCCTTTCATTGTTCAGCTGCGATACTCGTTTCAGACGAAATCTAAATTATATTTAATTCTGGATTTTATAAATGGAGGACATCTTTTCTTTCAGCTTTATCGACAAGGACTCTTCAGTGAGGAATTGGCTCGGGTTTATGCTGCAGAAATAGTTTCTGCTGTGTCGCATCTTCACAAAAATGGTATAATTCACCGGGATCTGAAACCTGAGAACATTCTTCTAGATGCTGAAGGGCATGTTATGTTGACTGATTTTGGCCTGGCCAAGGAAGTCAGTGAATCAATGCGATCCAATTCTATGTGTGGGACTACAGAGTACATGGCACCTGAGATTATACTTTCTAAAGGCCATGATAAAGCTGCTGATTGGTGGAGTGTGGGAATTCTTTTATTTGAAATGCTGACTGGTCAGCCTCCCTACACCAATAATAACAGGCAGAAGCTTCAAGAGAAAATTATCAAGGAGAAAATTAAGCTACCATCATATCTGACTTCTGAAGTTCATTCATTGCTCAAAGGATTGCTGCAGGAGGATCCTGTAAGCGCCTTGGGAGTGGAGTGAATGGCAGTGATGAAATT

Fln Alignment:

Contig19566___MLTDFGLAKEVSESMRSNSMCGTTEYMAPEIILSKGHDKAADWWSVGILLFEMLTGQPPYTNNNRXXXXXXXXXXXXXXPSYLTSEVHSLLKGLLQEDPVSALG
A9P2E8________________MLTDFGLAKEVDESMRSNSMCGTTEYMAPEILLSKGHNKSADWWSVGILLYEMLTGQPPYTNNNRHKLQEKIIKEKIKLPSYLTSEVHSLLKGLLQKDPSKRIG

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
88			66	33	1.0
92	33			66	1.0
97			33	66	1.0
99		33	66		1.0
100		33	66		1.0
109			33	16	1.0
110		16	33	50	1.0
111	16	50	33		1.0
142	85	14			0.993533
148		85	14		0.993533
149	14		85		0.993533
152			85	14	0.993533
155		85	14		0.993533
157			85	14	0.993533
158	85		14		0.993533
159			85	14	0.993533
162	85	14			0.993533
163			85	14	0.993533
164	85	14			0.993533
165	14	85			0.993533
317		15	84		0.999986
318	23		76		1.0
369		66		33	1.0
731		12	87		0.992554
734		12	87		0.992554
735	12			87	0.992554
949	84			15	0.999986
951	80	20			1.0
952	13	6	80		0.999961
1003	7	35		57	1.0
1093		13	86		0.999973
1168			27	72	1.0
1200		81	18		0.999994
1204		81	18		0.999994
1205	18			81	0.999994
1209		85		14	0.999981
1210	78		14	7	0.999974
1212	7	64	28		1.0
1213	78	7			0.999974
1214		85		14	0.999981
1215	78		14	7	0.999974
1217		14	85		0.999981
1221		14	85		0.999981
1349	88		11		0.923564
1352		11		88	0.923564
1354		11	88		0.923564
1369		11		88	0.923564
1371	88			11	0.923564
1372		11	88		0.923564
1374	88			11	0.923564
1377	88	11			0.923564
1378	88			11	0.923564
1379			87	12	0.992554
1382	87	12			0.992554
1383	87			12	0.992554
1384		87	12		0.992554
1385	87			12	0.992554
1386	87	12			0.992554
1389		12	87		0.992554
1391	87	12			0.992554
1417	84	15			0.999986
1419		15	84		0.999986
1425	75	8		16	0.99999
1623	11		88		0.999952
1624		11		88	0.999952
1625		11		88	0.999952
1627	88			11	0.999952
1628			12	87	0.999964
1635		12	87		0.999964
1636	87			12	0.999964
1637	87	12			0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain