SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19538

Length: 1771 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19538

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23832	89/121
SustainPine v2.0	sp_v2.0_unigene23960	7/121
SustainPine v2.0	sp_v2.0_unigene80556	3/121
SustainPine v2.0	sp_v2.0_unigene81095	19/121

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain protein, IPR003441 n=2 Tax=Populus trichocarpa RepID=A9PDI0_POPTR	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	nac domain ipr003441	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of cell fate commitment	GO:0010455	Biological Process	63%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	63%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	63%
Blast2go	root cap development	GO:0048829	Biological Process	63%
Blast2go	Cajal body	GO:0015030	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ9

Fln msg: your sequence is shorter than subject: 358 - 392

Fln protein: MAAANSQSCVPPGFRFHPTDEELLHYYLRKKVSYEMIDLNVIRDVDLNKLEPWDLHETCKIGSAPQDEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDKEKLQEDGWVVCRVFKKRMHNKDAKDINTERERSSPSGNDEERSAHALPQLMDFPSGEQVLHQYNHQHLDLGKPPPQARYSFSHDLFAQMSDLKPLDGATCNPSSTVIKSFIPQSLLHMNNSRRPQSINMLMGHLPEGPQIKLTANDFREDQRSNDWTLLDSLMGSHVDQTEPNKQMRYNDHPQALDGSSHGLALGVNRYDNNHYSSAGIEYWNFEK*

Protein Length: 359

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTCAATTTTAGAAAGTTACAGGTTTGTTCATTATGCCCACACCCATGGTTTTGGGTCTGGGTCTATGGAAGTGGATTTTTTTTGTGAAGATAGAATTCTGTTTGTAGAGAATTTTTGGAAGAAACTGTGTAAAGA_-_ATGGCAGCTGCCAATAGTCAATCGTGTGTTCCTCCGGGGTTTAGGTTTCATCCCACAGACGAAGAACTTCTGCATTACTACTTGAGGAAGAAGGTCTCTTATGAGATGATTGACCTCAATGTTATTCGGGATGTCGATCTGAACAAACTTGAGCCCTGGGATCTCCATGAGACATGCAAAATTGGGTCTGCTCCACAGGATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATACCCAACGGGCACTCGCACTAATAGAGCAACAGCTGCAGGCTTCTGGAAGGCAACTGGCAGGGATAAAATCATATTTATGAACTGTAAGCGAATTGGCATGAGGAAAACACTTGTATTCTACACAGGACGAGCCCCTCATGGCCAAAAAACAGAATGGATTATGCATGAATACCGTCTAGATGACAAGGAAAAACTACAGGAGGATGGATGGGTTGTGTGCCGTGTATTCAAGAAAAGGATGCACAACAAAGACGCCAAAGACATTAACACTGAACGTGAACGTTCAAGTCCAAGTGGAAATGATGAAGAAAGAAGTGCTCATGCCCTACCACAGCTCATGGATTTCCCCTCTGGGGAGCAAGTGCTCCATCAATATAATCACCAACATCTTGACCTAGGCAAGCCACCACCTCAAGCAAGATACAGTTTTTCCCATGATTTATTTGCTCAGATGTCAGATTTAAAACCCCTAGATGGGGCCACCTGCAACCCTAGTTCTACAGTTATCAAAAGCTTCATTCCACAAAGCCTGCTACACATGAATAACTCAAGGCGCCCCCAGTCAATCAATATGCTTATGGGGCATCTTCCCGAAGGACCACAGATTAAGCTCACTGCAAACGACTTTAGGGAAGATCAGCGTTCAAATGATTGGACTTTGTTGGACAGTCTTATGGGCTCCCATGTCGATCAAACAGAGCCAAATAAACAAATGAGATATAACGATCATCCCCAGGCTTTGGATGGATCTTCACATGGATTGGCACTTGGGGTTAACCGATATGATAATAATCACTATTCCAGCGCTGGAATCGAATACTGGAACTTCGAAAAATAA___AGCCGGACCATATAAGGTCGTAATGGGGATTATGGCATATGGAACAGCGCCTTCGATTTTAGCCATTCTTGCAAGTTTACACAGTCAACGATATATGTTTACTATTGAATATGTATATAGTATTGTACTGCCAAGTGTTTTTTCTACTAGCGTTATGCAATATTTTTTTGCATCATATAGCTGAGCAGGTTGATGTAACCTTAATAATATCTATGCTGGATACTGTACCCAAATTCTTATATTTAGCTTTCCATTTTGCAGAAACAAAATAAAGTGCTGTGCTTGTTTAAAGTCGCTTGCTTGATAGGGCGTCGGCTTCTTGATCTTGAGCCAATTGGGTATATAGGGAAGAAGCGTTAATGTGAGTAACAGTACTCTCATTTTAACATATTTATGTGATAAAGGATTTTTTAGTTGTACAGATCTATTTTGGGGAAGAGTTAATGTGAGTGGGTATTTTTTAATCTGTAAATATCTAGTTCGGAGGGTTAATGATTCAGCTTCGAACAGACTTCTTTATAAAGGTTGGCATATA

Fln Alignment:

Contig19538___AANSQSCVPPGFRFHPTDEELLHYYLRKKVSYEMIDLNVIRDVDLNKLEPWDLHETCKIGSAPQDEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDKE--------KLQEDGWVVCRVFKKRMHNKDAKDINTERERSSPSGNDEERSAHALPQLMDFPSGE--QVLHQYNHQHLDLGKPPPQARYSFSHDLFAQMSDLKPLDGATC-NPSSTVIKSFIPQS------LLHMNNSRRPQS--INMLMGHLPEGPQIKL--TANDFR---EDQRSNDWTLLDSLMGSHVDQTE---PNKQMR-------YNDHPQALDGSSHG-------LALGVNRYDNNHYSSAGIEYWNFEK
B8LLZ9________________SVNGQSRVPPGFRFHPTEEELLYYYLKKKVSFEKIDLDVIRDVDLNKLEPWDIQERCKIGSTPQHDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHTNLKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLDDAEYPQANTFNELQEDGWVVCRVFKKRNHHK-----SQESAELSPKYGSKQFSNNKILSDSDCPSDNLTDPLH-YTHQLNMCKQELEMQQYAFPHDQFMQLPQLESPKIPTCNNPPSSGIKRFFPDSRSGFFQLENITSSKRPCSYPMNLDMTEL-EGSTVTTHDHMTDFKPAEEVQNLQDWTVLDRLVASHLNGQEIETPKLGIRSYGAPNSSSDHQALVDAATVSGDQLTLLPQLRINRLNPHDYASCEIDLWNFVK

SNPs (tot: 110)

Position	A %	C %	G %	T %	Probability
220		81	18		0.999994
221	81			18	0.999994
223	81			18	0.999994
227		18	81		0.999994
228	81			18	0.999994
229	81			18	0.999994
232	81		18		0.999994
238		18	81		0.999994
239	18	81			0.999994
266		13		86	0.999973
267	86		13		0.999973
271		13	86		0.999973
272	86			13	0.999973
275	86		13		0.999973
276		13		86	0.999973
279	86			13	0.999973
418		90	10		0.90298
422	88	11			0.923564
423	88			11	0.923564
425	88		11		0.923564
427	88			11	0.923564
431	88			11	0.923564
493	75			25	1.0
494	75	25			1.0
495			25	75	1.0
498	25		75		1.0
500	75	25			1.0
503	71			28	1.0
506	66	33			1.0
507	66			33	1.0
508	66		33		1.0
509	66			33	1.0
514		16		83	0.994512
515	16	16	66		0.988813
516	16			83	0.994512
551	16		33		1.0
554	85	14			0.993533
556	87			12	0.992554
557	87	12			0.992554
558			12	87	0.992554
559			87	12	0.992554
562		12		87	0.992554
563		12		87	0.992554
564	87			12	0.992554
567		87	12		0.992554
568	87	12			0.992554
572	87			12	0.992554
573		12		87	0.992554
577	12		87		0.992554
612			87	12	0.992554
613	87			12	0.992554
616		12	87		0.992554
621	12		87		0.992554
750			83	16	0.994512
796	80		20		0.995493
799			20	80	0.995493
806	80			20	0.995493
811	80			20	0.995493
813		80		20	0.995493
890			80	20	0.995493
892		80		20	0.995493
896		83	16		0.994512
900		83		16	0.994512
901	83		16		0.994512
905		83		16	0.994512
907	83		16		0.994512
909		16		83	0.994512
911		83	16		0.994512
916		16	83		0.994512
918		16		83	0.994512
948	83			16	0.994512
950	83		16		0.994512
974	75	25			1.0
979	75		25		1.0
981		75	25		1.0
983	75	25			1.0
985	75			25	1.0
986			25	75	1.0
993		25	12		1.0
994	25		75		1.0
1002			10	90	0.90298
1005		90	10		0.90298
1006		40		60	1.0
1009	90	10			0.90298
1010			90	10	0.90298
1011			90	10	0.90298
1012	90		10		0.90298
1013		90	10		0.90298
1015	90			10	0.90298
1016		90	10		0.90298
1017	90			10	0.90298
1018		10	90		0.90298
1020		10		90	0.90298
1022	90	10			0.90298
1034	90	10			0.999898
1035	90			10	0.999898
1075		9	90		0.999842
1139			94	5	0.998578
1140	91		5		0.99441
1153		4		95	0.99692
1154			6	93	0.999999
1156		6	93		0.999999
1157	6		93		0.999999
1158	88	11			1.0
1160	2	4	93		0.985381
1161	4		90	2	0.9465
1254	41		58		1.0
1404	31		68		1.0
1505	46		53		1.0
1580			57	42	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain