SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19532

Length: 2447 nt

UniGene Fasta

>uagpf_v2_unigene19532
CGTCGTGACCTTGGCTGTCACTCATTTTCTATTTTCTGTTGTTGCACATGTCTTGTTGCTTTTGAGTTTGATCCTCGTTTGTAGCTGTATTTTTCATTTCATCTGGTCTGCCCTCGAAGACAGGGCCAGTCTATGACATTGCGTATATATGTCTGATCCTGCCCATTCACATTAATTTCCTTTAATGGACTGCATTCCACCCATGATTTCTGTTTCCTATTTATAAGCTCTTGTCGTTCACTGGGTTTCTATTATTTCAAGTGTCCACGGCACGCTGCATCAGAACATAAGTTAGGAAGATTTTCTGAACTGCTCTCCGGCTTCAAATTTGAGATACAAGATGAGGTCGAAAACAAATTCAGCAGACAGCAGGACCAGGAGTTCTGTTTCTATCTTCATTGTTTTGGGATTATGCTGTTTTTTCTACATACTGGGTGCTTGGCAGAAGAGTGGCTTTGGAAAGGGTGACAGGATTGCAGAGGAAATCACCAAACTGACAGACTGTACAACTTTGTCTCTAAATTTCGAGACTCACCACAATGAAGGAGATAACATTGAACTTTCTGAATCCAAAGCAAAGATATTCAAACCTTGTAGTGCCAAATACATTGATTACACGCCTTGTCATGACCAAAAGCGAGCTATGACATTTCCTAGAGATAATATGATATACAGAGAGAGGCATTGCCCACCAGAGGATGAGAAGCTACATTGCCTCATTCCTGCTCCAAGAGGATACAAAAATCCATTTCCATGGCCAAAGAGCCGTGACTATGTGCCATATGCTAATGTTCCCTATAAAAGTCTTACAGTAGAGAAGGCTATTCAGAATTGGGTTCAATTCGAAGGTGATGTGTTCAAGTTTCCTGGAGGAGGAACAATGTTTCCTCAAGGGGCAGATAAGTATATTGATGATCTGGCTCAAGTGATACCTATTTCTGATGGTACTGTCAGGACTGCATTGGACACAGGCTGTGGGGTGGCAAGCTGGGGTGCATATCTCTTGAAGAGAAATGTTTTGACCATGTCATTTGCTCCAAGGGATTCACATGAAGCTCAAGTGCAGTTTGCTTTGGAGCGGGGTGTCCCTGCGGTGATTGGAGTAATGGGGACACAGCGGCTTCCATACCCTTCTAGGGCTTTTGATATGTCTCAATTGTTCACGATGTTTGATTCCCTGGACTGCAAATGATGGTTTGTATTTAATAGAAGTGGATCGAGTCCTAAGACCAGGTGGATATTGGATTCTCTCTGGTCCTCCCATCAATTGGAAGCAGTATTACCAAGCTTGGCAGAGGTCTAAAGAGGAGCTCCAGAAGGAACAAGAAAGAATTGAAGAAATAGCAGAACTTTTGTGCTGGGAAAAGAAGTATGAAAAAGGTGACCTTGCCATTTGGCAAAAGAGAATTAATACTCATTCTTGTCCTAGAAGTCGGGATACTATTGACCCACCTCCTGCATGTGAATCAGTCAATCCAGATGATTCTTAGGTATAAGAGAATGGAAAGATGCACTACACGAATGCCTACAGCAAGTGATGCTAGTGAAGTGGCTGGAGGGATTTTGGAAAAGTTCCCAAAGCGCCTTAATGCTGTTCCTCCTAGAGTTCTCAGTGGTTCATTATCAGGTGTTTCAGCTGAGTCATATAATGCTGATACACAGTTGTGGAAGAAGCATGTGGAGGCCTACAAAAGAATCAACAAATATATTGGGGAGATTAGATATCGCAATGTTATGGACATGAATGCAGGTCTTGGTGGCTTTGCAGCAGCACTTACATCGAACAAAGCTTGGGTTATGAATGTTGTCCCAACCATTGCGAAAGACAATACACTTGGTGTGATATATGAGAGAGGCCTTATTGGAATTTATCATGACTGGTGTGAAGCTTTCTCAACATATCCAAGGACATATGATCTAATTCATGCAAATGGAGTTTTCAACATGTACCAAGACAGGTGCAACACAGAAGACATTCTTTTAGAGATGGATCGTATTTTGCGGCCAGAGGGCGCAGTCATACTTCGAGACAATGTTGATGTTTTGAACAGGGTGAAAAAAGTATTAGGTGGTATTAGATGGCATAGTAAGCTGCTGGACCACGAAGATGGACCTCTTGTTCCTGAAAAAATATTGATAGCTGTGAAAAAGTATTGGGTAGCTGATGGGAACCGGACTGCAGACTCTTGAGCAAAAGTAACGAGAAAGTATGATAGCAACGTTGTAGGATATTGCAGCAAGGTCCCCATTGACGCGTCGTGAAGGAAGTTACTTTAGGTTCTCACAAAAGAATTTACAAAAAAATTGGCAATGGATCCCGCCTTTGAATTTTTGTTGCGATTTTAGGCTTTAATGTAAGAGGATTGATTCTTGTGAAAATCTGCCAGGCTTGATTACTTAAGTGCTGCATGCGTTCTTCATCTAATTTATTTTTTTGTTAGTATTGG

Ace file of the UniGene uagpf_v2_unigene19532

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18725	99/109

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT2 [Arabidopsis thaliana] ref\|NP_849710.1\| putative methyltransferase PMT2 [Arabidopsis thaliana] sp\|B9DFI7.2\|PMT2_ARATH RecName: Full=Probable methyltransferase PMT2 gb\|AAK59830.1\| At1g26850/T2P11_4 [Arabidopsis thaliana] gb\|	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	atp binding	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	83%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMQ4

Fln msg: Separated hits, possible frame ERROR between 1153 and 1155, and possible frame ERROR between 1481 and 1492,

Fln protein: MRSKTNSADSRTRSSVSIFIVLGLCCFFYILGAWQKSGFGKGDRIAEEITKLTDCTTLSLNFETHHNEGDNIELSESKAKIFKPCSAKYIDYTPCHDQKRAMTFPRDNMIYRERHCPPEDEKLHCLIPAPRGYKNPFPWPKSRDYVPYANVPYKSLTVEKAIQNWVQFEGDVFKFPGGGTMFPQGADKYIDDLAQVIPISDGTVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDSHEAQVQFALERGVPAVIGVMGTQRLPYPSRAFDMxxNCSRCLIPWTANDGLYLIEVDRVLRPGGYWILSGPPINWKQYYQAWQRSKEELQKEQERIEEIAELLCWEKKYEKGDLAIWQKRINTHSCPRSRDTIDPPPACESVNPxxxxRYKRMERCTTRMPTASDASEVAGGILEKFPKRLNAVPPRVLSGSLSGVSAESYNADTQLWKKHVEAYKRINKYIGEIRYRNVMDMNAGLGGFAAALTSNKAWVMNVVPTIAKDNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFNMYQDRCNTEDILLEMDRILRPEGAVILRDNVDVLNRVKKVLGGIRWHSKLLDHEDGPLVPEKILIAVKKYWVADGNRTADS*

Protein Length: 619

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTATTTTCTGTTGTTGCACATGTCTTGTTGCTTTTGAGTTTGATCCTCGTTTGTAGCTGTATTTTTCATTTCATCTGGTCTGCCCTCGAAGACAGGGCCAGTCTATGACATTGCGTATATATGTCTGATCCTGCCCATTCACATTAATTTCCTTTAATGGACTGCATTCCACCCATGATTTCTGTTTCCTATTTATAAGCTCTTGTCGTTCACTGGGTTTCTATTATTTCAAGTGTCCACGGCACGCTGCATCAGAACATAAGTTAGGAAGATTTTCTGAACTGCTCTCCGGCTTCAAATTTGAGATACAAG_-_ATGAGGTCGAAAACAAATTCAGCAGACAGCAGGACCAGGAGTTCTGTTTCTATCTTCATTGTTTTGGGATTATGCTGTTTTTTCTACATACTGGGTGCTTGGCAGAAGAGTGGCTTTGGAAAGGGTGACAGGATTGCAGAGGAAATCACCAAACTGACAGACTGTACAACTTTGTCTCTAAATTTCGAGACTCACCACAATGAAGGAGATAACATTGAACTTTCTGAATCCAAAGCAAAGATATTCAAACCTTGTAGTGCCAAATACATTGATTACACGCCTTGTCATGACCAAAAGCGAGCTATGACATTTCCTAGAGATAATATGATATACAGAGAGAGGCATTGCCCACCAGAGGATGAGAAGCTACATTGCCTCATTCCTGCTCCAAGAGGATACAAAAATCCATTTCCATGGCCAAAGAGCCGTGACTATGTGCCATATGCTAATGTTCCCTATAAAAGTCTTACAGTAGAGAAGGCTATTCAGAATTGGGTTCAATTCGAAGGTGATGTGTTCAAGTTTCCTGGAGGAGGAACAATGTTTCCTCAAGGGGCAGATAAGTATATTGATGATCTGGCTCAAGTGATACCTATTTCTGATGGTACTGTCAGGACTGCATTGGACACAGGCTGTGGGGTGGCAAGCTGGGGTGCATATCTCTTGAAGAGAAATGTTTTGACCATGTCATTTGCTCCAAGGGATTCACATGAAGCTCAAGTGCAGTTTGCTTTGGAGCGGGGTGTCCCTGCGGTGATTGGAGTAATGGGGACACAGCGGCTTCCATACCCTTCTAGGGCTTTTGATATGTCxxxCAATTGTTCACGATGTTTGATTCCCTGGACTGCAAATGATGGTTTGTATTTAATAGAAGTGGATCGAGTCCTAAGACCAGGTGGATATTGGATTCTCTCTGGTCCTCCCATCAATTGGAAGCAGTATTACCAAGCTTGGCAGAGGTCTAAAGAGGAGCTCCAGAAGGAACAAGAAAGAATTGAAGAAATAGCAGAACTTTTGTGCTGGGAAAAGAAGTATGAAAAAGGTGACCTTGCCATTTGGCAAAAGAGAATTAATACTCATTCTTGTCCTAGAAGTCGGGATACTATTGACCCACCTCCTGCATGTGAATCAGTCAATCCAxxxxxxxxxxxxAGGTATAAGAGAATGGAAAGATGCACTACACGAATGCCTACAGCAAGTGATGCTAGTGAAGTGGCTGGAGGGATTTTGGAAAAGTTCCCAAAGCGCCTTAATGCTGTTCCTCCTAGAGTTCTCAGTGGTTCATTATCAGGTGTTTCAGCTGAGTCATATAATGCTGATACACAGTTGTGGAAGAAGCATGTGGAGGCCTACAAAAGAATCAACAAATATATTGGGGAGATTAGATATCGCAATGTTATGGACATGAATGCAGGTCTTGGTGGCTTTGCAGCAGCACTTACATCGAACAAAGCTTGGGTTATGAATGTTGTCCCAACCATTGCGAAAGACAATACACTTGGTGTGATATATGAGAGAGGCCTTATTGGAATTTATCATGACTGGTGTGAAGCTTTCTCAACATATCCAAGGACATATGATCTAATTCATGCAAATGGAGTTTTCAACATGTACCAAGACAGGTGCAACACAGAAGACATTCTTTTAGAGATGGATCGTATTTTGCGGCCAGAGGGCGCAGTCATACTTCGAGACAATGTTGATGTTTTGAACAGGGTGAAAAAAGTATTAGGTGGTATTAGATGGCATAGTAAGCTGCTGGACCACGAAGATGGACCTCTTGTTCCTGAAAAAATATTGATAGCTGTGAAAAAGTATTGGGTAGCTGATGGGAACCGGACTGCAGACTCTTGA___GCAAAAGTAACGAGAAAGTATGATAGCAACGTTGTAGGATATTGCAGCAAGGTCCCCATTGACGCGTCGTGAAGGAAGTTACTTTAGGTTCTCACAAAAGAATTTACAAAAAAATTGGCAATGGATCCCGCCTTTGAATTTTTGTTGCGATTTTAGGCTTTAATGTAAGAGGATTGATTCTTGTGAAAATCTGCCAGGCTTGATTACTTAAGTGCTGCATGCGTTCTTCATCTAATTTATTTTTTTGTTAGTATTGG

Fln Alignment:

Contig19532___YKMRSKTNSADSRTRSSVSIFIVLGLCCFFYILGAWQK--------SGFGKGDRIAEEITKLTDCTTLSLNFETHHNEGDNIELSESKAKI-FKPCSAKYIDYTPCHDQKRAMTFPRDNMIYRERHCPPEDEKLHCLIPAPRGYKNPFPWPKSRDYVPYANVPYKSLTVEKAIQNWVQFEGDVFKFPGGGTMFPQGADKYIDDLAQVIPISDGTVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDSHEAQVQFALERGVPAVIGVMGTQRLPYPSRAFDMSxNCSRCLIPWTANDGLYLIEVDRVLRPGGYWILSGPPINWKQYYQAWQRSXXXXXXXXXXXXXXAELLCWEKKYEKGDLAIWQKRINTHSCPRSRDTIDPPPACESVNPDxxxxYKRMERCTTRMPTASDASEVAGGILEKFPKRLNAVPPRVLSGSLSGVSAESYNADTQLWKKHVEAYKRINKYIGEIRYRNVMDMNAGLGGFAAALTSNKAWVMNVVPTIAKDNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFNMYQDRCNTEDILLEMDRILRPEGAVILRDNVDVLNRVKKVLGGIRWHSKLLDHEDGPLVPEKILIAVKKYW
B8LMQ4________________YSGSPKLHQSEFKKKRLTWILGVAGLCTLFYFLGAWQNTLPPPSEASRLRKANVSCSSLSPIVSSSSVSLDFEAHHAVGGN---ETSKDSINFESCDIKYSEYTPCQDPDRARKFDRTKLIYRERHCPDKKEALKCLIPAPPGYKNPFRWPKSRDYAWFANVPHRELTIEKAVQNWIQVEDDKFRFPGGGTMFTRGADAYIDDIDKLIPLTDGSIRTAIDTGCGVASWGAYLLKRNILTMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAxHCSRCLIPWKDYDGVYLIEVDRVLRPGGYWILSGPPVNWKKYHRGWERTPEDLKQEQDAIEDVAKRLCWKKVVEKGDLAIWQKPMNHIDCVKSRNIYKVPHICKNDNPDxxxxYRKMETCITPLPEVNDINAVAGGALEKWPKRVTAVPPRIRSGSIPGITAENFNEDSKLWTDRVANYKRLIGQLGQGRYRNIMDMNAGLGGFAAALANDPVWVMNVVPSDAKHNTLGVIYERGFIGTYQDWCEAFSTYPRTYDLIHASGLLSMYQDRCEISDILLEMDRILRPEGTVIFRDTVDVLVKVENLIGGMRWQSQMMDHESGPFNQEKILIAVKQYW

SNPs (tot: 128)

Position	A %	C %	G %	T %	Probability
153		33		66	0.997452
165			66	33	0.997452
166		66	33		0.997452
167		66	33		0.997452
169	66			33	0.997452
170			33	66	0.997452
175	66			33	0.997452
176		33		66	0.997452
177	33			66	0.997452
201	33	66			0.997452
236		40		60	1.0
242			40	60	1.0
243	40	60			1.0
244	60	40			1.0
247			60	40	1.0
251		40		60	1.0
253		40	60		1.0
257	40			60	1.0
372	75		25		0.996473
373			75	25	0.996473
375	75		25		0.996473
376			75	25	0.996473
381	75			25	0.996473
384	75			25	0.996473
387	25			75	0.996473
390	25		75		0.996473
399			12	87	0.992554
402	87		12		0.992554
404			12	87	0.992554
405	12		87		0.992554
406		12		87	0.992554
407		12		87	0.992554
412			87	12	0.992554
413	87		12		0.992554
415		12		87	0.992554
628		11	88		0.923564
629			11	88	0.923564
688	85		14		0.993533
1139		75		25	0.996473
1140			50	50	1.0
1141	25			75	0.996473
1143		25		50	0.995533
1144	50		25	25	0.995533
1145			50	50	1.0
1147	25		75		0.996473
1149		25		75	0.996473
1150			25	75	0.996473
1152		25	25	50	0.995533
1153	25		75		0.996473
1154	50	50			1.0
1156	50	25	25		0.995533
1157	16	16		66	0.988813
1158		16	83		0.994512
1159	16			83	0.994512
1162		83	16		0.994512
1164	66	16			0.988813
1173		16	83		0.994512
1241	16		83		0.994512
1242			83	16	0.994512
1244		16	83		0.994512
1246	83	16			0.994512
1580	83	16			0.994512
1583		16		83	0.994512
1584		83	16		0.994512
1585		83		16	0.994512
1586		83	16		0.994512
1588	83	16			0.994512
1589	83	16			0.994512
1590			83	16	0.994512
1591		83		16	0.994512
1593		83	16		0.994512
1597	83	16			0.994512
1599		16		83	0.994512
1600			83	16	0.994512
1602	16			83	0.994512
1654		33		66	1.0
1731	88	11			0.923564
1733	88		11		0.923564
1736	11		88		0.923564
1738	88	11			0.923564
1833	87	12			0.992554
1835	87			12	0.992554
1837	87		12		0.992554
1838	87			12	0.992554
1839			12	87	0.992554
1852		12	87		0.992554
1858			10	90	0.90298
1860	90			10	0.90298
1862	90			10	0.90298
1863		10	90		0.90298
1865		10	90		0.90298
1866			90	10	0.90298
1868	10	90			0.90298
1887	90		10		0.90298
2050		33		66	1.0
2053		33		66	1.0
2054			33	66	1.0
2058	66	33			1.0
2061	66			33	1.0
2064		40	60		1.0
2065		12		87	0.992554
2067	50			37	1.0
2068	62	37			1.0
2070	62	25	12		1.0
2071	62			37	1.0
2072	25	25	12		1.0
2075		12		75	0.975346
2076	83	16			0.994512
2079	87		12		0.992554
2081		12	87		0.992554
2084			87	12	0.992554
2085		12		87	0.992554
2087		12		87	0.992554
2089	87	12			0.992554
2090	12		87		0.992554
2115		75		25	1.0
2117	62			12	1.0
2118	62	12			1.0
2120	62	25			1.0
2123		18	75	6	1.0
2130	6		12	81	0.999943
2132		14		85	0.999981
2135		85	14		0.999981
2137		14	85		0.999981
2139	85	14			0.999981
2140	85			14	0.999981
2141	85	14			0.999981
2228			38	61	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain