SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19495

Length: 838 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19495

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5524	22/43
SustainPine v2.0	sp_v2.0_unigene6294	1/43
SustainPine v2.0	sp_v2.0_unigene32032	9/43
SustainPine v2.0	sp_v2.0_unigene35575	4/43
SustainPine v2.0	sp_v2.0_unigene45650	1/43
SustainPine v2.0	sp_v2.0_unigene61665	1/43
SustainPine v2.0	sp_v2.0_unigene61817	1/43
SustainPine v2.0	sp_v2.0_unigene80533	1/43

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFZ3_RICCO	-	-	3.0e-09	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%
Blast2go	adp-ribosylation factor gtpase-activating protein agd3-like	-	-	2.88011e-15	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	2.88011e-15	60%
Blast2go	regulation of flower development	GO:0009909	Biological Process	2.88011e-15	60%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	2.88011e-15	60%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	2.88011e-15	60%
Blast2go	kinase binding	GO:0019900	Molecular Function	2.88011e-15	60%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.88011e-15	60%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.88011e-15	60%

Full-Lengther Next Prediction

SNPs (tot: 78)

Position	A %	C %	G %	T %	Probability
38	33	66			0.997452
40		33		66	0.997452
43			66	33	0.997452
48		66		33	0.997452
50	33			66	0.997452
54	33			66	0.997452
56		33		66	0.997452
58	66			33	0.997452
59		66		33	0.997452
60	33			66	0.997452
62	66			33	0.997452
65		20		80	0.999996
67			20	80	0.999996
73		20	80		0.999996
77	20			80	0.999996
148	10			90	0.90298
155	58			41	1.0
165	16		83		0.999991
166	83		16		0.999991
180			83	16	0.999991
181	75	25			1.0
193			18	81	0.999994
221	81		18		0.999994
231		63	36		1.0
242	81		18		0.999994
249			90	10	0.90298
263	61	15	15		0.999988
264	84			15	0.999986
265		84		15	0.999986
266			15	84	0.999986
267	15			84	0.999986
268			84	15	0.999986
273		36	9	54	1.0
345			44	55	1.0
360	66			33	1.0
368	83		16		0.999991
370	83	16			0.999991
371		8	16	75	0.99999
372	83			16	0.999991
373	83		16		0.999991
374	72			27	1.0
375		18		81	0.999994
380	81	18			0.999994
381			80	20	0.999996
385		22		77	0.999999
393		11		88	0.923564
407	44	55			1.0
411	88		11		0.923564
428		25		75	1.0
431	12		87		0.992554
433		10		90	0.90298
434			10	90	0.90298
437	90		10		0.90298
447			10	90	0.90298
448		10	90		0.90298
449	90			10	0.90298
453		11		88	0.923564
455		11	88		0.923564
501		44	55		1.0
503		50		50	1.0
507	28			71	1.0
508			71	28	1.0
524	85	14			0.993533
527		14		85	0.993533
529			85	14	0.993533
530		87	12		0.992554
533	87	12			0.992554
534	87			12	0.992554
536		87	12		0.992554
538		12		87	0.992554
539		12		87	0.992554
541	87	12			0.992554
542	12			87	0.992554
607		28	71		1.0
651		90		10	0.90298
672	85		14		0.993533
691		80		20	0.995493
698	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain