SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19494

Length: 1290 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19494

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15451	28/31
SustainPine v2.0	sp_v2.0_unigene15677	1/31
SustainPine v2.0	sp_v2.0_unigene70267	1/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative VAMP protein SEC22 [Arabidopsis thaliana]	-	-	1.0e-32	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	vamp protein sec22	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to virus	GO:0051607	Biological Process	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL00

Fln msg: Overlapping hits, possible frame ERROR between 905 and 902,

Fln protein: MSGKGGNKDCGNHSRPFFGPARPIRRCMSSLCVLVIIALLVILIVFLVLHPHKPRFYVQDATVRELNLTNGVLTTMVQFSIVSHNPNDRIGVYYDSLSAYATYEGQQITPPCSLTPF*PGRQxxxDVLSPVLTGINVALAPFVADHLNYEKQNHLLSLTLKMYGRIRWKVGTWTSGHYHLNVNCFAIMGMVNTGNGQVPLQPGTRCDVEV*

Protein Length: 212

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCCGTTTCCAGAGAGTGTAGGGTTGAGGGAAGGACGTGGAATTCTTTTTAAATTCAGACAGCCGACACGCAGAGCCAGACACTGGCGGGCGCGTTGGCCTGAGCTTTTCTTTCTTTGTTCTGCGACGCTGCAACGACCTGGAGCTAACGTTTCTCGTGTGTGGATTACAGAGCTTTGGCCAATCGGCTCTCGACATTAAAGAATACAGTACAGTACAGTAAGCCTCCGACCTGAAACGGACGATTCTCGGATCGGGCGGTTTCTGTTGGAGCTTCGACCGCCAGTACGCTAGCCGGAGGTTCGAAGGTTCGTCCAACCTTCCGTGATCCTGTCCTTTTTATATTGCAGTAGCCCTAGTATTTTTGCTCAGATCAGATCCATTCGTTTCGATTTGGCCTCTCTTTCTGCTGAGCGTCAGAAATTCTGGCATCACAGTGCTAATTGTAGGGCTGATTTGATTCAGAATTTTGTCTCGAGGAGAGAATTAGGGGCGCCAAGCTTCAGAC_-_ATGTCAGGGAAAGGGGGCAACAAGGACTGCGGCAACCATTCAAGGCCGTTTTTTGGACCGGCGAGGCCCATCCGGAGATGTATGAGTTCTCTGTGCGTGCTCGTCATCATCGCGCTCCTGGTGATCCTGATCGTCTTCCTGGTTCTGCACCCGCACAAGCCACGATTCTATGTTCAGGACGCTACGGTGCGCGAGCTGAATCTCACCAATGGCGTGCTCACCACGATGGTCCAGTTCTCCATCGTCTCGCACAACCCGAATGACAGGATCGGTGTCTACTACGACAGCCTCAGCGCCTACGCCACTTACGAGGGGCAGCAGATCACGCCCCCCTGCTCGTTGACCCCTTTCTGACCAGGGCGACAGxxxxxxxxxGACGTGCTGTCTCCGGTTTTAACCGGGATCAACGTTGCCCTGGCGCCCTTCGTGGCCGATCATCTGAACTACGAGAAGCAGAACCACTTGCTGAGCTTGACTCTAAAGATGTACGGGAGGATCCGCTGGAAGGTGGGCACCTGGACTTCTGGGCATTATCATTTGAATGTCAATTGCTTTGCTATCATGGGAATGGTTAACACCGGCAATGGACAAGTTCCTCTGCAGCCCGGCACCAGATGCGATGTGGAGGTCTGA___ATGTGAGTTTTTATAGGTTAAATTAAATTATATCAGAATTTCATGGTACAGTAGGGTAGTCACTATGTTTCAGGTTTTATTGAATAATTTGAGCATCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

Contig19494___MSGKGGNKDCGNHSRPFFGPARPIRRCMSSXXXXXXXXXXXXXXXXXXXHPHKPRFYVQDATVRELNLTNGVLTTMVQFSIVSHNPNDRIGVYYDSLSAYATYEGQQITPPCSLTPF*PGRQxxDVLSPVLTGINVALAPFVADHLNYEKQNHLLSLTLKMYGRIRWKVGTWTSGHYHLNVNCFAIMGMVNTGN-GQVPLQPGTRCDVEV
B8LL00________________MQGKGGSKDCGNHGSPRLLPGRGFRRCMGSLFVLVVIALFVILVVYLVLHPHKPRFYVQDATVHQLNLTNGLLTSSLQFSIVSHNPNDRIGVYYDSLNAYATYAGEQITPQCSLTPFYQGDNxxDVLSPILYGNSVALAPFVADHLNYEKQNGVLSLTLKMYGRIRWKVGSWTSGRYHLNVNCFAIMGMRNSGNAGQVPLQPGTRCDVEV

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
126	33		66		0.997452
130			66	33	0.997452
131	66		33		0.997452
132	33		66		0.997452
137		33		66	0.997452
138	33			66	0.997452
142	33			66	0.997452
260	80			20	0.995493
262		80	20		0.995493
267	75	25			0.996473
268	75			25	0.996473
269		75		25	0.996473
272	75	25			0.996473
273		75		25	0.996473
275	75			25	0.996473
276		25		75	0.996473
277	25			75	0.996473
292	28		71		1.0
294		14		85	0.993533
295	14			85	0.993533
298	14		85		0.993533
367		88	11		0.923564
369		11		88	0.923564
370			11	88	0.923564
372			11	88	0.923564
374		12		87	0.992554
375	88	11			0.923564
380		90		10	0.90298
385	10		90		0.90298
386	10	90			0.90298
387		90		10	0.90298
390	90			10	0.90298
391			90	10	0.90298
393	90		10		0.90298
394		10		90	0.90298
396			10	90	0.90298
398		10		90	0.90298
399	10		90		0.90298
499	90			10	0.90298
568		27		72	1.0
570		72		27	1.0
571		27	72		1.0
573		72		27	1.0
574	72		27		1.0
578	72			27	1.0
580			30	70	1.0
581		70	30		1.0
582	70	30			1.0
583	70			30	1.0
585			66	33	1.0
590	11	22	66		0.999999
591	25			62	1.0
867	90			10	0.90298
870		71		14	0.984337
871		85	14		0.993533
872	14	85			0.993533
875		85		14	0.993533
884		14	85		0.993533
887		83		16	0.994512
889	12	87			0.992554
890			25	75	1.0
892		25		75	1.0
893		75	25		1.0
899	60			40	1.0
900		16	50	33	1.0
902			83	16	0.994512
906	66			33	1.0
908	33	16			1.0
909		33	50	16	1.0
910	50			50	1.0
911		83	16		0.994512
912	33		66		1.0
913	83	16			0.994512
915			16	83	0.994512
916	83			16	0.994512
923		16	83		0.994512
924	16	83			0.994512
1044			16	83	0.994512
1045			83	16	0.994512
1048	83	16			0.994512
1049		16	83		0.994512
1050			83	16	0.994512
1061		16	83		0.994512
1067		16		83	0.994512
1075	83	16			0.994512
1076			16	83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
231	247	TACAG TACAG TACAG TA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain