SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19332

Length: 1149 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19332

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23215	13/111
SustainPine v2.0	sp_v2.0_unigene25604	85/111
SustainPine v2.0	sp_v2.0_unigene79409	3/111

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-7 n=219 Tax=Eukaryota RepID=CALM7_ARATH	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	calmodulin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	99%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
99	66	33			0.997452
100			33	66	0.997452
103		66	33		0.997452
105			33	66	0.997452
106	33			66	0.997452
110	66			33	0.997452
116	66		33		0.997452
117	66			33	0.997452
119	66		33		0.997452
124	33	66			0.997452
194		66	33		1.0
195	33		66		1.0
196		83		16	0.994512
198	50		16	33	1.0
200	66		33		1.0
201		16	83		0.994512
202		33		66	1.0
204			50	50	1.0
205		50	16	33	1.0
207	33			66	1.0
208		83	16		0.994512
211		16		50	1.0
212	33		50	16	1.0
213		16	83		0.994512
214	16			83	0.994512
453	91	8			0.999766
454	91		8		0.999766
457			91	8	0.999766
663		6	93		0.999999
671	95			4	0.996252
777	90	2			0.999998
779		95		4	0.997218
781	92		4	2	0.987114
782		95		4	0.997218
784	4			95	0.997494
785		4		95	0.997494
787	4	93	2		0.983471
807		50		47	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain