SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19312

Length: 496 nt

UniGene Fasta

>uagpf_v2_unigene19312
CGTCGTGACCTTGGCTGTCACTCACTCTGCACCTCTCGGTGCAATAACTAGTTATAAACCCTAGAATATTAGGGTTTATTGACACATATCATAGATTTTAGGGTTTATTGATACCTACCATAGATTCGATTCGAGTGCATTCCGTGGTTGCGGCTGAGTCGGGGCAACAGCTTCAAAATGGTCTTACGGGCTTGGTGCGCTCCTGTAAGCTCGGGGGGACAAAGTAGCAATATAGAGAAATTTTCTTAAATAACTTTTTATTTCTTCTACCAACGAACGAATACTGCGTACCATGCTTCTGGTGCTTCCTTTGGTACAACGAAAAACGTAATCGCGTATACAAAAGTGGGGTGCCAAAATGGGGTTTAAGGGAACCAAGGCCGAGAAGAAGGTCGTCTACGACAAGAAAATATGTGACTTGCTGGAGCAATACTCACAGGTTCTGATCTGCGTTGCAGACAATGTGGGATCCAAGCAGTTGCAGGGCATTCGTGCC

Ace file of the UniGene uagpf_v2_unigene19312

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16309	8/11
SustainPine v2.0	sp_v2.0_unigene21434	3/11

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=60S acidic ribosomal protein P0 gb\|AAB63814.1\| acidic ribosomal protein P0 [Glycine max]	-	-	79%
FL-Next	sp=60S acidic ribosomal protein P0; Zea mays (Maize).	-	-	68%
Blast2go	60s acidic ribosomal protein p0	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	90%
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	response to zinc ion	GO:0010043	Biological Process	90%
Blast2go	gene expression	GO:0010467	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	nucleolus	GO:0005730	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-
Sma3	Ribosomal protein L10/acidic P0	IPR001790	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O24573

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 46 - 319

Fln protein: MGFKGTKAEKKVVYDKKICDLLEQYSQVLICVADNVGSKQLQGIRA

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTGCACCTCTCGGTGCAATAACTAGTTATAAACCCTAGAATATTAGGGTTTATTGACACATATCATAGATTTTAGGGTTTATTGATACCTACCATAGATTCGATTCGAGTGCATTCCGTGGTTGCGGCTGAGTCGGGGCAACAGCTTCAAAATGGTCTTACGGGCTTGGTGCGCTCCTGTAAGCTCGGGGGGACAAAGTAGCAATATAGAGAAATTTTCTTAAATAACTTTTTATTTCTTCTACCAACGAACGAATACTGCGTACCATGCTTCTGGTGCTTCCTTTGGTACAACGAAAAACGTAATCGCGTATACAAAAGTGGGGTGCCAAA_-_ATGGGGTTTAAGGGAACCAAGGCCGAGAAGAAGGTCGTCTACGACAAGAAAATATGTGACTTGCTGGAGCAATACTCACAGGTTCTGATCTGCGTTGCAGACAATGTGGGATCCAAGCAGTTGCAGGGCATTCGTGCC

Fln Alignment:

Contig19312___MGFKGTKAEKKVVYDKKICDLLEQYSQVLICVADNVGSKQLQGIR
O24573________________MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
121	88		11		0.923564
123	88	11			0.923564
127			11	88	0.923564
128	11	88			0.923564
129		11	88		0.923564
130	88	11			0.923564
133		88	11		0.923564
135	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain