SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19304

Length: 2088 nt

UniGene Fasta

>uagpf_v2_unigene19304
CGTCGTGACCTTGGCTGTCACTCAGGTCTGAATTTCTATTACCGGTCGTTGCATTGCATCCTTTCATTCGATTAACGGGCGACCCTGTGGTCTTCCACGTGGACTCGAAAAGCGAGCCAAACAATCTCTGAGCCGTCCGCTAGTGCTGAATCGACGGCTGTTGTGAGAGGGTCCGGAAGGGCAGGTGGGAGTCGGAAGGGTTTTAGAGCGACTTCATCACCTGGCTATTCGCAGAGAGGCAGCAGGGTGTTTCTTAGACTTTTACATCAGTTTTCTTAGATTTCGTTCCTTTGGTTTTCGGATCGCAATGGCAATGGCGGCTTCCACCATGATGAGATCGTCTGTTACGGCGGGATCGTTTCGTGAAAATCATCGTCCTTCTGTTGCGGTTGATGCACAGATCCGATCAAAGATAACCAGAACCGATGGCACAGTCAGATTGCCTTTCGGAAGCTTTGGAAGCAATTTCTTCGGATCCACTGCAGAGTTTGGCCAGGGTTCAGCCTTACAATGTCAGAGTGCTAGGACTTTGCAGCCAGTTAGAGCTACTGCAACAGAAGCCCCTCCTAGAGTTCAAAGATCCTCGGGAAAGGAGAGGACCAAGATAGGAATAAATGGATTTGGTCGTATTGGGAGGCTGGTTTTGCGTGTTGCATTGAGCAGGGAAGATATCGAAGTAGTTGCAATCAATGACCCTTTCATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCAACTCATGGGGTATACAAAGGGAGCTTGAAGATTGTTGATGATACGACTCTTGAAATTGATGGTCACAGTATTACTGTCAATTCTAAAAGGGATCCGTCAGAGATTCCCTGGGGTAACTATGGAGCTGAATATGTTGTAGAATCATCTGGAGTTTTTACAACAACCGAGAAGGCTTCTGCACATCTTAAGGGTGGAGCTAAGAAGGTTGTAATTTCTGCTCCATCAGCGGATGCACCCATGTTTGTGGTTGGAGTAAACGAAGGATCATATAAGCCTGAAATGTCTATTGTTTCAAATGCAAGCTGCACAACTAATTGCCTTGCTCCTCTTGCAAAGGTGGTGAATGAAGAATTTGGTATTGCTGAGGCCCTCATGACCACTGTTCATGCAACAACAGCTACACAGAAGACAGTAGATGGTCCATCTATGAAGGATTGGCGTGGAGGTCGTGGTGCTGGACAAAATATCATTCCAAGCTCAACTGGTGCTGCAAAGGCAGTTGGGAAGGTCCTTCCAGAGTTGAATGGAAAGCTAACTGGAATGGCTTTCCGTGTACCAACACCCAATGTCTCAGTTGTGGATCTGACATGTCGCCTTGCGAAACCAGCATCTTACGATGATATAAAAGCAGCAATGAAGGCTGCATCTGAAGGGTCACTAAAAGGCATCCTTGGATACACTGATGAAGATGTCGTTTCGAATGATTTTGTAGGTGATTCAAGGTCGAGTATCTTTGATGCTAAGGCTGGTATAGCCTTGAGTTCTACCTTTGTGAAACTTGTTTCTTGGTATGACAATGAGTGGGGATACAGCAACCGAGTGGTGGACTTGATCTCACACATGGCTTTAGTTGCTTCACGCAAATAGAGATTCTTCTATTTTGGAGTATTTGATGGGTCTTTTGTGGACCTCTAGCCTCGTTACGTAGTACACTCTAGGGAATGAGTTAAATTTTAGGATCCTTGGTGTGGTAATTGAAGAAAGCAGAAGGCAACCCAGTGTGTTTAGGTTGCCTGAGTATTTTATTTTGACAAATATGCTATCCATCATCTCTGGATGGTAAATTTTTGATGAAGTACTATTATGCAGATATTGGATCTTTTTTGGAATAAAATATATTCGCAGTAGATTTCATCTTTTCTGTTTTTAGAGTCGAGGATATGCGCATTGTTTAATGATGTGGTGTTACGGCATCTTCAGGGTTCTGAATCCCTCTCTGATTAATTTTTTTGTACACTTGACATGATAATTTCTGCCCAAAGATAACCTGGTAAATGTTGTCGCTTATGGTAGAATCTCTTGCTTCTTACTCGGAAATAGAATCTCTTGCTTCTTAACTAAACGGG

Ace file of the UniGene uagpf_v2_unigene19304

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15495	196/223
SustainPine v2.0	sp_v2.0_unigene61787	2/223
SustainPine v2.0	sp_v2.0_unigene76794	1/223
SustainPine v2.0	sp_v2.0_unigene78545	2/223
SustainPine v2.0	sp_v2.0_unigene79403	2/223

Source	Descriptions	Term	Type	Identity
AutoFact	Glyceraldehyde-3-phosphate dehydrogenase n=5 Tax=Pinaceae RepID=Q37264_PINSY	-	-	92%
FL-Next	tr=Glyceraldehyde-3-phosphate dehydrogenase; Pinus sylvestris (Scots pine). Plastid; Chloroplast.	-	-	98%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).	EC:1.2.1.12	-	0.0	93%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	93%
Blast2go	Biosynthesis of phenylpropanoids	01061	93%
Blast2go	Biosynthesis of terpenoids and steroids	01062	93%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	93%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	93%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	93%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	93%
Blast2go	Biosynthesis of plant hormones	01070	93%
Blast2go	Metabolic pathways	01100	93%
Blast2go	Biosynthesis of secondary metabolites	01110	93%

Source	GOs	Term	Type	Identity
Blast2go	primary root development	GO:0080022	Biological Process	93%
Blast2go	tapetal layer development	GO:0048658	Biological Process	93%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	93%
Blast2go	amino acid homeostasis	GO:0080144	Biological Process	93%
Blast2go	pollen development	GO:0009555	Biological Process	93%
Blast2go	copper ion binding	GO:0005507	Molecular Function	93%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	93%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	93%
Blast2go	plastid	GO:0009536	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000173	-	0.0	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q37265

Fln msg:

Fln protein: MAMAASTMMRSSVTAGSFRENHRPSVAVDAQIRSKITRTDGTVRLPFGSFGSNFFGSTAEFGQGSALQCQSARTLQPVRATATEAPPRVQRSSGKERTKIGINGFGRIGRLVLRVALSREDIEVVAINDPFIDAKYMAYMFKYDSTHGVYKGSLKIVDDTTLEIDGHSITVNSKRDPSEIPWGNYGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEGSYKPEMSIVSNASCTTNCLAPLAKVVNEEFGIAEALMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLAKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIALSSTFVKLVSWYDNEWGYSNRVVDLISHMALVASRK*

Protein Length: 435

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTGAATTTCTATTACCGGTCGTTGCATTGCATCCTTTCATTCGATTAACGGGCGACCCTGTGGTCTTCCACGTGGACTCGAAAAGCGAGCCAAACAATCTCTGAGCCGTCCGCTAGTGCTGAATCGACGGCTGTTGTGAGAGGGTCCGGAAGGGCAGGTGGGAGTCGGAAGGGTTTTAGAGCGACTTCATCACCTGGCTATTCGCAGAGAGGCAGCAGGGTGTTTCTTAGACTTTTACATCAGTTTTCTTAGATTTCGTTCCTTTGGTTTTCGGATCGCA_-_ATGGCAATGGCGGCTTCCACCATGATGAGATCGTCTGTTACGGCGGGATCGTTTCGTGAAAATCATCGTCCTTCTGTTGCGGTTGATGCACAGATCCGATCAAAGATAACCAGAACCGATGGCACAGTCAGATTGCCTTTCGGAAGCTTTGGAAGCAATTTCTTCGGATCCACTGCAGAGTTTGGCCAGGGTTCAGCCTTACAATGTCAGAGTGCTAGGACTTTGCAGCCAGTTAGAGCTACTGCAACAGAAGCCCCTCCTAGAGTTCAAAGATCCTCGGGAAAGGAGAGGACCAAGATAGGAATAAATGGATTTGGTCGTATTGGGAGGCTGGTTTTGCGTGTTGCATTGAGCAGGGAAGATATCGAAGTAGTTGCAATCAATGACCCTTTCATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCAACTCATGGGGTATACAAAGGGAGCTTGAAGATTGTTGATGATACGACTCTTGAAATTGATGGTCACAGTATTACTGTCAATTCTAAAAGGGATCCGTCAGAGATTCCCTGGGGTAACTATGGAGCTGAATATGTTGTAGAATCATCTGGAGTTTTTACAACAACCGAGAAGGCTTCTGCACATCTTAAGGGTGGAGCTAAGAAGGTTGTAATTTCTGCTCCATCAGCGGATGCACCCATGTTTGTGGTTGGAGTAAACGAAGGATCATATAAGCCTGAAATGTCTATTGTTTCAAATGCAAGCTGCACAACTAATTGCCTTGCTCCTCTTGCAAAGGTGGTGAATGAAGAATTTGGTATTGCTGAGGCCCTCATGACCACTGTTCATGCAACAACAGCTACACAGAAGACAGTAGATGGTCCATCTATGAAGGATTGGCGTGGAGGTCGTGGTGCTGGACAAAATATCATTCCAAGCTCAACTGGTGCTGCAAAGGCAGTTGGGAAGGTCCTTCCAGAGTTGAATGGAAAGCTAACTGGAATGGCTTTCCGTGTACCAACACCCAATGTCTCAGTTGTGGATCTGACATGTCGCCTTGCGAAACCAGCATCTTACGATGATATAAAAGCAGCAATGAAGGCTGCATCTGAAGGGTCACTAAAAGGCATCCTTGGATACACTGATGAAGATGTCGTTTCGAATGATTTTGTAGGTGATTCAAGGTCGAGTATCTTTGATGCTAAGGCTGGTATAGCCTTGAGTTCTACCTTTGTGAAACTTGTTTCTTGGTATGACAATGAGTGGGGATACAGCAACCGAGTGGTGGACTTGATCTCACACATGGCTTTAGTTGCTTCACGCAAATAG___AGATTCTTCTATTTTGGAGTATTTGATGGGTCTTTTGTGGACCTCTAGCCTCGTTACGTAGTACACTCTAGGGAATGAGTTAAATTTTAGGATCCTTGGTGTGGTAATTGAAGAAAGCAGAAGGCAACCCAGTGTGTTTAGGTTGCCTGAGTATTTTATTTTGACAAATATGCTATCCATCATCTCTGGATGGTAAATTTTTGATGAAGTACTATTATGCAGATATTGGATCTTTTTTGGAATAAAATATATTCGCAGTAGATTTCATCTTTTCTGTTTTTAGAGTCGAGGATATGCGCATTGTTTAATGATGTGGTGTTACGGCATCTTCAGGGTTCTGAATCCCTCTCTGATTAATTTTTTTGTACACTTGACATGATAATTTCTGCCCAAAGATAACCTGGTAAATGTTGTCGCTTATGGTAGAATCTCTTGCTTCTTACTCGGAAATAGAATCTCTTGCTTCTTAACTAAACGGG

Fln Alignment:

Contig19304___VTAGSFRENHRPSVAVDAQIRSKITRTDGTVRLPXXXXXXXXXXXTAEFGQGSALQCQSARTLQPVRATATEAPPRVQRSSGKERTKIGINGFGRIGRLVLRVALSREDIEVVAINDPFIDAKYMAYMFKYDSTHGVYKGSLKIVDDTTLEIDGHSITVNSKRDPSEIPWGNYGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEGSYKPEMSIVSNASCTTNCLAPLAKVVNEEFGIAEALMXXXXXXXXXXXXXDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLAKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIALSSTFVKLVSWYDNEWGYSNRVVDLISHMALVASRK
Q37265________________VTAGSFRENHRPSVAVDAQIRSKITSTDGTVRLPFGSFGSNFFGSTAEFGQGSALQCQSARTLQPVRATATEAPPRVQRSSGKERTKIGINGFGRIGRLVLRVALSKEDIEVVAINDPFIDAKYMAYMFKYDSTHGVYKGSLKIVDDTTLEIDGHRITVNSKRDPSEIPWGNYGAEYVVESSGAFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEGSYKPEMSIVSNASCTTNCLAPLAKVVNEEFGIAEALMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDARSSIFDAKAGIALSSTFVKLVSWYDNEWGYSNRVVDLISHMALVASRK

SNPs (tot: 112)

Position	A %	C %	G %	T %	Probability
54		40		60	1.0
187			80	20	0.995493
213			40	60	1.0
216	60		40		1.0
218		60	40		1.0
223		13	33	53	1.0
224		13	86		0.999973
225		46	53		1.0
226		53		46	1.0
227	46			53	1.0
228	13		40	46	1.0
231	40		46	13	1.0
233			13	40	1.0
251	7			92	0.999664
252		7	92		0.999664
255	4		8	88	0.999262
258			8	92	0.999718
259	88			12	1.0
260		8	92		0.999718
263		4		88	0.999262
265		8		92	0.999718
266	8	4		88	0.999262
285			9	90	1.0
504		95	4		0.999989
505	93			6	1.0
514	96	3			0.984346
520			96	3	0.983282
522	3		96		0.983282
575	50		50		1.0
607		9	90		0.999842
608	90		9		0.999842
610	90	9			0.999842
612			90	9	0.999842
613	90		9		0.999872
616	88	11			0.999952
617	88	11			0.999952
618	88			11	0.999952
622	88	11			0.999952
625		11		88	0.999952
626	10	10	80		0.99967
627		10	90		0.999898
630	10		90		0.999898
638	88			11	0.999937
639		11	88		0.999937
640	11		88		0.999937
643		11	88		0.999937
644	11		88		0.999937
967	78		21		1.0
969		78	21		1.0
971		28	71		1.0
975	78	21			1.0
983	23	76			1.0
1013	81		18		1.0
1015	87		12		0.999964
1017	81		12	6	0.999943
1023			87	12	0.999964
1024	81		12	6	0.999943
1025	81	6	12		0.999943
1026	87	12			0.999964
1091		14		85	0.999981
1158			90	10	0.90298
1160	90	10			0.90298
1162	90	10			0.90298
1187		11		88	0.923564
1188			88	11	0.923564
1189			88	11	0.923564
1190	88	11			0.923564
1192		11	88		0.923564
1220	87		12		0.992554
1221	87			12	0.992554
1222		12	87		0.992554
1223		87	12		0.992554
1225		87	12		0.992554
1227	87	12			0.992554
1230			87	12	0.992554
1237		87		12	0.992554
1238	85	14			0.993533
1240	85	14			0.993533
1241			85	14	0.993533
1242		14	85		0.993533
1243	14	85			0.993533
1384	63	36			1.0
1386			63	36	1.0
1389		27		72	1.0
1393		36		63	1.0
1396			63	36	1.0
1397	63		36		1.0
1398	63		36		1.0
1399		36	63		1.0
1400			63	36	1.0
1425		72		27	1.0
1474	85			14	0.999981
1480	5		11	83	0.999887
1482		11	11	77	0.999842
1484	77	11			0.999842
1488		11		88	0.999937
1489	77	11		11	0.999842
1490	88			11	0.999937
1498	88	11			0.999937
1499	11			88	0.999937
1500	88	11			0.999937
1501			88	11	0.999937
1503	11	88			0.999937
1554	64	35			1.0
1610	94	3		1	0.936582
1611	94	3	1		0.936582
1613	94	1		3	0.936582
1621			3	94	0.930835
1626		3		96	0.99245
1627	5	1		92	0.999988
1870		58		41	1.0
1902	37		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain