SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19282

Length: 702 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19282

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21112	16/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to synaptotagmin binding, cytoplasmic RNA interacting protein, isoform 1 [Ornithorhynchus anatinus]	-	-	3.0e-31	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	heterogeneous nuclear ribonucleoprotein q	-	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	mRNA metabolic process	GO:0016071	Biological Process	58%
Blast2go	gene expression	GO:0010467	Biological Process	58%
Blast2go	binding	GO:0005488	Molecular Function	58%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	58%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	58%
Blast2go	nuclear part	GO:0044428	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Xklp2 targeting protein	IPR009675	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
145			22	77	0.999999
147	77	22			0.999999
148			22	77	0.999999
149	77			22	0.999999
152		22	77		0.999999
156		77		22	0.999999
157	77		22		0.999999
160	77			22	0.999999
161	77		22		0.999999
162			77	22	0.999999
167	11	11	77		0.968132
168	11		88		0.923564
213		10	90		0.90298
221	90			10	0.90298
222		90		10	0.90298
223		90	10		0.90298
224	90		10		0.90298
225		10	90		0.90298
227	90		10		0.90298
228	90			10	0.90298
229	90	10			0.90298
230	10		90		0.90298
231		10		90	0.90298
233		10		90	0.90298
234	10		90		0.90298
289	78	7		14	0.999974
294		90		10	0.90298
295		90		10	0.90298
297			80	20	0.999996
298		10	90		0.90298
300		90	10		0.90298
301		90		10	0.90298
302		10		90	0.90298
303	10		90		0.90298
305	90	10			0.90298
306	10			90	0.90298
309	10		90		0.90298
503		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain