SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19235

Length: 1188 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19235

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7522	15/37
SustainPine v2.0	sp_v2.0_unigene25558	18/37
SustainPine v2.0	sp_v2.0_unigene69122	2/37
SustainPine v2.0	sp_v2.0_unigene78464	2/37

Source	Descriptions	Term	Type	Identity
AutoFact	putative dienelactone hydrolase family protein [Salvia miltiorrhiza]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	endo- - -beta-d-	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%
Blast2go	apoplast	GO:0048046	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQD2

Fln msg:

Fln protein: MAGIQCCESAPQLDPAVGIGRVETFQHLSAYVTAAPDAKAGVILISDVFGFEAPNLRKLADKVAAAGYFVVVPDFFYGDPFVPGSAENPFAGFQDWIKNHGPAKGFEDSTKVIEVLKGRGISTIGAAGFCWGAKPVVELSKGEVLKAGVLLHPSFVTVDDIEAVKAPLAILGAENDKTSPPELVQQFEAILSAKPEVDSFVKIYPGVAHGWTVRYDENDEVAVKNAEEAHVKMLEWFNKYIN*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTCTAAGAAGTAGAACATAGTGGAAGGTGAAATACTAAGAGATTGAGAC_-_ATGGCAGGTATTCAGTGCTGCGAGTCGGCTCCTCAACTAGATCCAGCTGTGGGTATTGGACGGGTGGAGACATTCCAACATTTGTCAGCCTATGTTACCGCTGCTCCCGACGCGAAGGCGGGTGTCATTCTTATCTCCGACGTCTTTGGATTCGAGGCTCCAAATCTTAGGAAGCTTGCTGACAAAGTAGCAGCAGCTGGATACTTCGTGGTTGTTCCTGATTTCTTTTATGGAGATCCATTCGTACCAGGGAGTGCTGAAAATCCTTTTGCTGGGTTTCAAGATTGGATTAAAAATCATGGGCCAGCCAAGGGATTTGAGGACTCTACCAAAGTTATAGAGGTTTTGAAAGGCAGAGGCATATCTACTATTGGTGCAGCTGGCTTTTGCTGGGGAGCCAAGCCGGTGGTGGAGCTATCTAAGGGAGAGGTTCTGAAAGCAGGAGTATTATTACATCCTTCATTTGTAACAGTTGATGATATTGAAGCGGTTAAAGCACCACTTGCAATACTGGGGGCGGAAAATGACAAAACCAGTCCACCTGAACTTGTACAGCAGTTTGAAGCAATTCTGTCTGCAAAACCAGAGGTAGATAGCTTTGTTAAAATTTATCCTGGGGTTGCTCATGGCTGGACTGTAAGATACGATGAGAATGATGAAGTTGCTGTAAAGAATGCTGAAGAGGCTCATGTGAAAATGCTAGAATGGTTTAATAAGTATATAAATTGA___TAAGATACATCTATATATTAGAACATATTTATGTTCATCGTATGGATGAGATCTCATTTATTTACTACTACAAAATGACTTCATAAAATATGTAGATATGTCCTCCATTTGAATCCCTTAAAGGTATTTCAGTTGACTACTTCTGGTTTTGTGCCCTGATATTTGGCCCATTTCTCCTTTCTTGTCTTTCAAAACACGATGTATGGAATGTCTTGGAAGCAAGGTATGGTATTGTCTTGGAAGCAAGGATAGTAATATACATTGTGACTTTTAGATTCTAAGAGACTGATTTTCACTGAACTGGGATTTTGTCCTGGTTATAACCATTGCTTCACATGGTTGGTGCTTTATTACTTTTTCATCTATATTTACAGAATTAAAGGT

Fln Alignment:

Contig19235___MAGIQCCESAPQLDPAVGIGRVETFQHLSAYVTAAPDAKAGVILISDVFGFEAPNLRKLADKVAAAGYFVVVPDFFYGDPFVPGSAENPFAGFQDWIKNHGPAKGFEDSTKVIEVLKGRGISTIGAAGFCWGAKPVVELSKGEVLKAGVLLHPSFVTVDDIEAVKAPLAILGAENDKTSPPELVQQFEAILSAKPEVDSFVKIYPGVAHGWTVRYDENDEVAVKNAEEAHVKMLEWFNKYIN
C0PQD2________________MAGPQCCESAPQLHPGVGIGRVETFEHLSVYVTASPDAKAAVILISDIFGFEAPNLRKLADKVAAAGYFVVVPDFFYGDPFVPGSAENPLAGFQDWIKSHGPAKGFDDSTKVIEVLKSRGISAIGAAGFCWGAKVVVELTKGEVLKAGVLLHPSFVTVDDIKVVKAPLAILGAEIDKSSPPELVEQFGAILSAKPEVDSFVKIYPGVAHGWTVRYDENDEVAVKNAEEAHVKMLEWLNKYLN

SNPs (tot: 94)

Position	A %	C %	G %	T %	Probability
180		85		14	0.993533
181		14		85	0.993533
183		85		14	0.993533
184			14	85	0.993533
185	14	85			0.993533
188			85	14	0.993533
189	85			14	0.993533
190		85	14		0.993533
193			85	14	0.993533
194	85		14		0.993533
195	85			14	0.993533
196		14	85		0.993533
197	14		85		0.993533
199			85	14	0.993533
200		14	85		0.993533
201	14		85		0.993533
251	85			14	0.993533
254	14	85			0.993533
256	14			85	0.993533
263	85		14		0.993533
264	85			14	0.993533
265	85	14			0.993533
268	71		14		0.984337
269	14		85		0.993533
271	85	14			0.993533
272			85	14	0.993533
273		85		14	0.993533
274	85		14		0.993533
279		14	85		0.993533
282	85	14			0.993533
283	14	85			0.993533
415		16		83	0.994512
416	83		16		0.994512
418	83	16			0.994512
420	83			16	0.994512
422	16		83		0.994512
423		16		83	0.994512
424		16		83	0.994512
428	83		16		0.994512
429	83	16			0.994512
430	83			16	0.994512
432			83	16	0.994512
435		16	83		0.994512
436	83			16	0.994512
437		14	85		0.993533
438	14		85		0.993533
440	77		22		0.999999
442	77	22			0.999999
443			22	77	0.999999
444		77		22	0.999999
445			22	77	0.999999
449	77	22			0.999999
463		11	77		0.968132
464	12		75		0.975346
466	12			87	0.992554
473		22	77		0.999999
475			77	22	0.999999
481	77			22	0.999999
482	77			22	0.999999
484		77	22		0.999999
486			77	22	0.999999
490	22		77		0.999999
491		22	77		0.999999
493		22	77		0.999999
494	22		77		0.999999
525			85	14	0.993533
526	81	18			0.999994
529	90		10		0.90298
531			10	90	0.90298
535	90		10		0.90298
537	90		10		0.90298
540	10	90			0.90298
541		10		90	0.90298
592	83			16	0.999991
601			72	18	0.999994
606	81			18	0.999994
610		81		18	0.999994
614	81			18	0.999994
616		81		18	0.999994
627	18	81			0.999994
645	81		18		0.999994
653		81		18	0.999994
686		50		50	1.0
698		50		50	1.0
710		20		80	0.999996
711			80	20	0.999996
712		20	80		0.999996
713	20	50		30	1.0
717	50		50		1.0
728		50		50	1.0
761	30			70	1.0
833			83	16	0.994512
851		83		16	0.994512
980		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain