SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19230

Length: 1134 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19230

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9786	4/57
SustainPine v2.0	sp_v2.0_unigene21572	49/57
SustainPine v2.0	sp_v2.0_unigene63630	2/57

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast processing peptidase [Arabidopsis thaliana] sp\|Q8H0W1.2\|PLSP1_ARATH RecName: Full=Chloroplast processing peptidase; AltName: Full=Signal peptidase I-3; Flags: Precursor gb\|AAU05529.1\| At1g05140 [Arabidopsis thaliana] gb\|AEE76927.1\| chloroplast	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	72%
Blast2go	protein maturation	GO:0051604	Biological Process	72%
Blast2go	peptidase activity	GO:0008233	Molecular Function	72%
Blast2go	plastid envelope	GO:0009526	Cellular Component	72%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	Peptidase S26A, signal peptidase I, lysine active site	IPR019757	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNH9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 268 - 400

Fln protein: VVTLAVLSVHAFA*VNLAAAT*ICYLSMTAIYRLFPFKWTRWLPCHEFSTSPTRGFMGCSVRRMIEQGAVPAEERKKQITTTEIQDGTLKWSTWDACKAAVAAFLASTAFRWIILEPRFIASSSMHPTLETGDHIIAEKISYYFRRPDVDDVVLFSATKPMQEYGINSEEVLIKRVVAKAGDLVEVCNGKLLVNGIVKTEDFIAEPAAYDMTAIRVPDGCVFVMGDNRNNSCDSHIWGPLPVENILGRYVLRYLRPSQVGIAACGLS*

Protein Length: 269

Fln nts: CGTCGTGACCTTGGCTGTCCTCAGCGTTCACGCATTTGCTTGAGTTAATCTCGCTGCGGCTACTTGAATCTGTTATCTCAGTATGACGGCAATTTACAGACTTTTCCCTTTCAAGTGGACCAGATGGCTGCCCTGTCATGAATTCTCGACGTCTCCGACCAGAGGTTTCATGGGTTGTAGTGTAAGAAGGATGATTGAGCAGGGGGCCGTGCCTGCAGAGGAACGAAAGAAGCAGATAACGACGACCGAGATCCAAGACGGCACTTTGAAATGGTCAACTTGGGATGCCTGCAAGGCCGCCGTTGCAGCGTTTTTGGCTTCCACAGCTTTCCGGTGGATTATTTTGGAGCCTAGGTTCATAGCGTCCTCCTCTATGCATCCCACTTTGGAGACGGGGGATCATATTATCGCGGAAAAGATTTCTTATTATTTTCGGAGACCAGATGTGGATGATGTTGTACTTTTCAGCGCTACAAAGCCAATGCAGGAATATGGGATCAATTCAGAGGAAGTTTTGATCAAAAGAGTAGTTGCTAAGGCTGGAGACCTCGTGGAGGTCTGCAATGGGAAGCTTTTGGTAAATGGAATTGTTAAAACTGAAGACTTTATAGCAGAGCCAGCTGCATATGACATGACTGCAATACGTGTGCCTGATGGTTGTGTATTTGTAATGGGTGACAACCGCAACAATAGCTGTGACTCTCATATTTGGGGACCTCTTCCTGTTGAGAACATTTTAGGGAGATATGTACTACGTTATTTGCGACCATCACAAGTAGGTATAGCTGCTTGTGGACTAAGCTAG___AAGGTTCGAGTTCTGACAGGGATAGAGATCTCTATCTCTACCCATTAAAACCCATCATGTGGAACGAGGCTCCCGTGATGGAGCGCTGTAGTGAAAGGGGATTAACCAGGTGCAATGCACTCGTTGGAATGGTCTAGGTAATACTTTATTGAATAACTGTGGTATTTGTGATGGTCATCCGTATTCCTATCTGCTGGATTTCTGAACATTTTGAACAGTATTCCATGCAACATTTTGAACATTTTTCATAATTTTCTATGGTCAACATTACTATCTGCTGGTTTTGTTGCTAGATTTGCTCCATAATGACATTAGTCTGACCATCCACA

Fln Alignment:

Contig19230___FKWTRWLPCHEFS-----TSPTRG----FMGCSVRR------MIEQGAVPAEERKKQITTTEIQDGT--LKW-STW-----DACKXXXXXXXXXXXFRWIILEPRFIASSSMHPTLETGDHIIAEKISYYFRRPDVDDVVLFSATKPMQEYGINSEEVLIKRVVAKAGDLVEVCNGKLLVNGIVKTEDFIAEPAAYDMTAIRVPDGCVFVMGDNRNNSCDSHIWGPLPVENILGRYVLRYLRPSQVG
B8LNH9________________FQGLKWLPCHEFFQGLLLVKPGRRDNCVSSSCSLSNDDQGGGVEEDNALLEKETEKRPETVQQKSGSERLSWLPEWAHISSDDAKTLAAAVAISLIFRSFVAEPRFIPSLSMYPTFNVGDRIVAEKVSYYFRKPDVTDIVIFKAPPTLQKNGYSAGDVFIKRVVAKSGDCVEVRNGKLLVNGVVQDEDFILEPPKYEMDPVCVPEDYVFVMGDNRNNSFDSHVWGPLPVKNILGRSVLRYWPPTRLG

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
43		25		75	0.996473
61			80	20	0.995493
72	80			20	0.995493
73	80		20		0.995493
76	20			80	0.995493
77		20	80		0.995493
79	9	18	9	63	0.999997
86		9	45	45	1.0
133		45		54	1.0
252		64	35		1.0
316			33	66	1.0
402			16	83	0.994512
442	85	14			0.993533
444	85			14	0.993533
446		85	14		0.993533
447	85			14	0.993533
450		14		85	0.993533
451			85	14	0.993533
455	85	14			0.993533
458	85			14	0.993533
459		14		85	0.993533
460	14		85		0.993533
461		14		85	0.993533
463		14	85		0.993533
464	14			85	0.993533
475	14		85		0.993533
479	14	85			0.993533
488		11		88	0.923564
492	77		11	11	0.968132
493			88	11	0.923564
494			88	11	0.923564
495	88	11			0.923564
496	88	11			0.923564
497		11		77	0.968132
498	77	11		11	0.968132
500		11	88		0.923564
502	11		77	11	0.968132
503	88		11		0.923564
508		11		88	0.923564
577	12		87		0.992554
648		11		88	0.923564
658		11		88	0.923564
677	71			28	1.0
713	88	11			0.923564
755			88	11	0.923564
782			88	11	0.923564
783		11		88	0.923564
827	12			87	0.992554
905	50	50			1.0
911	37		54	4	1.0
941		40		59	1.0
948			54	45	1.0
963	57			42	1.0
964	57			42	1.0
991	42	52	5		1.0
1122		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain