SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19224

Length: 1781 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19224

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7910	238/265
SustainPine v2.0	sp_v2.0_unigene25819	4/265
SustainPine v2.0	sp_v2.0_unigene80010	4/265
SustainPine v2.0	sp_v2.0_unigene82066	2/265

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Solanum lycopersicum]	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	alpha- -glucan-protein synthase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycogenin glucosyltransferase.	EC:2.4.1.186	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	95%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	95%
Blast2go	glycogenin glucosyltransferase activity	GO:0008466	Molecular Function	95%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	95%
Blast2go	plasmodesma	GO:0009506	Cellular Component	95%
Blast2go	cell wall	GO:0005618	Cellular Component	95%
Blast2go	extracellular region	GO:0005576	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKS5

Fln msg:

Fln protein: MAGPALTPILKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIAVPKGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLRHGISTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTTSNAESAAPNGAAK*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCACACGTCGTGACCTTGGCTGTCACTCAATAGCATTTCACTCCATTCACTTCATTCCTTTGCAGTTGCACTGCTCCAGTTTCATCTTCATCCGCGAAGAAGAAGCA_-_ATGGCAGGTCCTGCTCTCACACCGATCCTGAAGGATGAGCTTGATATCGTGATACCCACGATCAGGAACCTGGATTTTCTAGAAATGTGGAGGCCTTTCTTTGAGCAATATCATCTTATTATTGTGCAGGATGGGGATCCATCAAAGACAATCGCTGTGCCAAAGGGTTTTGACTATGAGCTTTACAATAGAAATGACATCAACAGGATCCTCGGCCCGAAAGCCTCCTGCATTTCTTTTAAGGACAGTGCTTGCCGATGCTTCGGATATATGGTCTCAAAGAAAAAATATATCTACACAATTGACGATGATTGTTTTGTTGCAAAGGATCCGTCTGGGAAGGACATCAATGCTCTAGAGCAGCATATTAAGAATTTGCTGTCACCGTCAACGCCATTCTTTTTCAATACCCTGTATGATCCATACAGAGATGGTGCAGACTTTGTTCGCGGCTACCCCTTCAGTCTTCGTCACGGAATATCCACTGCTGTTTCCCATGGCCTTTGGATGAACATCCCGGATTATGATGCCCCTACTCAACTTGTGAAGCCCTTGGAACGAAACACGAGGTATGTTGATGCGGTGTTAACAATTCCTAAGGGTACTCTGTTCCCTATGTGTGGGATGAATTTGGCCTTTGATCGAGAGTTGATAGGCCCTGCAATGTACTTTGGATTGATGGGCGATGGTCAGCCTATTGGTCGCTACGACGACATGTGGGCAGGATGGTGTGTAAAGGTAATTTGTGACCACCTAGGCTTGGGTGTGAAGACAGGACTTCCTTACATTTGGCACAGCAAAGCTAGTAACCCTTTCGTTAATTTGAAGAAAGAGTACAAGGGGATCTTTTGGCAAGAGGAGATAATTCCATTTTTCCAATCTGCCACCCTCCCTAAGGAATGCACCTCTGTGCAACAATGCTACATTGAATTATCAAAGCAAGTGAAGGAAAGTCTTGGGAAAGTCGATCCGTATTTCCAGAAGCTAGCGGATGCCATGGTAACATGGATTGAGGCTTGGGATGAGCTCAATCCTACCACAAGCAATGCTGAATCTGCTGCTCCTAATGGAGCAGCTAAGTGA___GCCAAGTAGCTAGCGTGATCCAGATTAAATTTCATTTATGAACTCTGAAGAATATCTATTTTCTAGTTTATGTTATTTTTTTGTAGATGAATACATTTCTTGCAGTTCAGCGGTAGTGATTAGTTTGTTATTTATTCAGTTACAGAATAGCTGAGCCTAGGTTTTGACATCAATAGAGGCATTTGATGGAGTGGGGGCATATTTGAGAATTTGCATGCAGTAGCATGCCTGTATTGAGTCTTTTACCTTCATGGATCTGTCACTGATATTGGGTTTATGTTAACTCATATTTTATGATGAGATTTATTGCTGCTATGGATCTTGCATGAGTATGATGAATCTTGAATTTTTGTAAAAGCAAATGATCTTCATTCTAACAACAGACTGTAAAAGCGAATCTTACTTCAGATCTTGGATAAATGTGATGAAACTTGTGATAAGTGCTGGGGCATATTTGAGAATTTACATGCACTAGCATCCCTGTATTGAGCTTTTACCTTAATGGATCTGTCTCTGCTTATTGGGTTTATGTTAACTCATTTTTTTATGATGAGATTTATTGTTGACCGT

Fln Alignment:

Contig19224___MAGPALTPILKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIAVPKGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLRHGISTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTTSN
A9NKS5________________MAGPAPTPILKDELDIVIPTIRNLDFLEMWRPFFEAYHLIIVQDGDPSKIISVPKGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVFTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTASN

SNPs (tot: 154)

Position	A %	C %	G %	T %	Probability
23	14		85		0.993533
24		14		85	0.993533
26		14	85		0.993533
28	14		85		0.993533
32		14		85	0.993533
34	14		85		0.993533
35		14	85		0.993533
36	14	85			0.993533
38	14		85		0.993533
39			14	85	0.993533
45	14	85			0.993533
46	85		14		0.993533
48	85	14			0.993533
49	14			57	1.0
77		93	6		0.999364
79			6	93	0.999364
82	6	93			0.999364
83	93	6			0.999364
84		6	93		0.999364
88		90		3	0.996531
89	90	3	6		0.996531
99		6		90	0.997073
145	96			3	0.993591
146		96	3		0.993591
150			96	3	0.993591
151	96			3	0.993591
152			3	96	0.993591
153		96	3		0.993591
157	96	3			0.993591
333			85	14	1.0
420		42		57	1.0
472	85		14		0.993533
476	85		14		0.993533
479	14	85			0.993533
480		14		85	0.993533
483	85			14	0.993533
485	85			14	0.993533
489			85	14	0.993533
491	87		12		0.992554
493	87	12			0.992554
494			12	87	0.992554
496	87		12		0.992554
499	87	12			0.992554
500	87	12			0.992554
503			12	87	0.992554
507	12		87		0.992554
645		33	66		1.0
646		16	83		0.999991
647	83		16		0.999991
649			18	81	0.999994
651		18		81	0.999994
652		18	81		0.999994
653	81			18	0.999994
656		81	18		0.999994
658		81		18	0.999994
659		81	18		0.999994
709			83	16	0.999991
710		16		83	0.999991
713			16	83	0.999991
715	83	16			0.999991
717	83			16	0.999991
718	83			16	0.999991
719			16	83	0.999991
720			16	83	0.999991
722		83	16		0.999991
766		14	85		0.999981
767	78	7	14		0.999974
771	84			15	0.999986
774		15	84		0.999986
778	84		15		0.999986
779		15		84	0.999986
780	84			15	0.999986
782			84	15	0.999986
784	15	84			0.999986
868	90	10			0.90298
869			10	90	0.90298
871		10		90	0.90298
878	90			10	0.90298
879		88		11	0.923564
880		88	11		0.923564
881			11	88	0.923564
882	88	11			0.923564
883			88	11	0.923564
886	11			88	0.923564
887		11		88	0.923564
888			88	11	0.923564
889		11	88		0.923564
890	11		88		0.923564
916		16		83	0.999991
918			83	16	0.999991
920	83			16	0.999991
921		83	16		0.999991
923		16	83		0.999991
925	81			18	0.999994
926	81			18	0.999994
927	81		18		0.999994
934	81	18			0.999994
937		81		18	0.999994
939	18			81	0.999994
957	90	10			0.90298
960	90	10			0.90298
966	90			10	0.90298
967	90			10	0.90298
971		12	87		0.992554
975	11			88	0.923564
976		11		88	0.923564
977			11	88	0.923564
980	11		88		0.923564
982	88	11			0.923564
983	88			11	0.923564
984			88	11	0.923564
985	88		11		0.923564
987		11	88		0.923564
988	88			11	0.923564
990	88			11	0.923564
991		11		88	0.923564
993	88	11			0.923564
1013		75		25	1.0
1055		20		80	0.999996
1057	80	20			0.999996
1058	80		20		0.999996
1060		16	16	66	0.999991
1061	83		16		0.999991
1062		16		83	0.999991
1064	66			33	1.0
1065	66		16	16	0.999991
1066	83		16		0.999991
1069	66			16	0.999991
1070	66			33	1.0
1073		16	83		0.999991
1074	83			16	0.999991
1076		9	63	9	0.999997
1077	9	27	63		1.0
1078	81			18	0.999994
1079	81	18			0.999994
1216	83			16	0.999991
1245	88	11			0.999952
1246		5	11	82	0.999919
1248		11		88	0.999952
1249	82		11	5	0.999919
1253	82	11		5	0.999919
1259	82			5	0.999919
1260	82	5	11		0.999919
1261	5	11	82		0.999919
1262	88			11	0.999952
1263	88		11		0.999952
1265	88	11			0.999952
1266	11			88	0.999952
1269	88	11			0.999952
1270	13			86	0.999973
1426		54	45		1.0
1430		45		54	1.0
1501	62			37	1.0
1579		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain