SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19162

Length: 856 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19162

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15341	57/66

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome b5 [Nicotiana tabacum]	-	-	7.0e-23	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	cytochrome b5	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	0.0	72%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b5	IPR001199	-	0.0	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
125		11		88	0.923564
127			88	11	0.923564
129	88		11		0.923564
130	88			11	0.923564
132	11		88		0.923564
133		22		77	0.999999
136	88			11	0.923564
137			11	88	0.923564
139	88	11			0.923564
143		11		88	0.923564
333			12	87	0.992554
351		10	90		0.90298
352		90	10		0.90298
353		10		90	0.90298
354			10	90	0.90298
355	10			90	0.90298
356		90	10		0.90298
357	77	11	11		0.968132
358	77	11		11	0.968132
359	77			22	0.999999
360			88	11	0.923564
361	77		11	11	0.968132
362	77	22			0.999999
363	88			11	0.923564
364		11	11	77	0.968132
367	11	88			0.923564
368	88	11			0.923564
369			77	11	0.968132
417		92	7		0.999532
419	92	7			0.999532
425	92	7			0.999532
444	3	6	86	3	0.994799
445		3	90	6	0.997952
500		6		93	0.999364
511	93	6			0.99903

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain