SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene19150

Length: 1539 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene19150

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8202	73/80
SustainPine v2.0	sp_v2.0_unigene68099	2/80

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj\|BAD15406.1\| KH domain-containing protein-like [Oryza sativa Japonica Group] gb\|EAY84850.1\| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb\|EAZ22072.1\| hypothetica	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	zinc finger ccch domain-containing protein 14-like	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	65%
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU06

Fln msg:

Fln protein: MDPRKKPKTQLHPNDNGDANPNSTEKESISTALGSKSKACTKFFSPSGCPFGEGCHYLHYVPGGVNAIPQMPTLGNTFGAGSRKTVGLTPGVPSLDKPDPGLGYKTRLCNRFGTDEKCMFGDKCHFAHGEKELRKGNLLAKDLERERIAGPYSSMAASADLEGKPGGHSLYRDPPPGITAAANFGASSTAKISIDASLASCIIGKGGANTKQIFRLTGTKMFIKEHESNPNLKNVELEGSFEQIKQATAMVRELIMHNEMQSAKPSVHVPQNRKTKLCENYAKGTCTFGDRCNFAHGANELREQPAGS*

Protein Length: 310

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGTCGTGACGTTTTCTTTTACTCGGCATTCAAATGAAAATAAGGTAAAAAACCACGAGCGAGGGAGGGCTTTTTCTAACGTCCCTGGCGCCGGCTGCTGCTACTGATATCTATCTACATTTGGGGGCGTCCCTGGCAACAGAAGAAGTCGCGAGCAAAGCGATAGAAAAGGAGGTTCTGTGAAAAAGTGGTGGCAGGCGGTCGTCA_-_ATGGATCCTCGCAAGAAGCCCAAAACCCAACTCCATCCCAACGACAATGGAGATGCGAACCCCAACTCCACAGAAAAGGAGTCAATATCAACTGCTTTAGGGAGTAAATCAAAGGCATGCACCAAGTTTTTCAGTCCGTCTGGATGTCCATTTGGTGAGGGTTGCCATTACCTGCATTATGTTCCTGGTGGAGTAAATGCTATTCCTCAGATGCCAACACTGGGAAACACTTTTGGAGCAGGTTCGAGGAAAACAGTAGGGCTTACACCTGGTGTTCCATCTTTAGACAAGCCAGATCCTGGACTAGGCTACAAGACACGCCTTTGTAATCGTTTTGGCACTGATGAAAAATGCATGTTTGGAGATAAGTGCCATTTTGCCCATGGAGAGAAGGAACTGAGAAAGGGAAATTTACTTGCAAAAGATCTTGAAAGGGAGCGAATAGCAGGTCCTTACAGCAGCATGGCTGCCTCTGCTGATCTAGAGGGGAAGCCAGGAGGACATTCACTATACCGTGATCCTCCTCCTGGAATAACTGCTGCTGCAAATTTTGGTGCTTCATCAACAGCAAAAATTAGTATTGATGCTTCTCTTGCTAGTTGTATAATTGGTAAAGGTGGTGCAAACACAAAGCAAATTTTCCGCTTAACTGGCACAAAAATGTTTATAAAGGAACACGAGTCTAATCCTAATTTGAAGAATGTCGAGCTTGAAGGTTCATTTGAGCAGATAAAGCAAGCCACAGCCATGGTCCGTGAGTTGATTATGCACAATGAGATGCAATCTGCCAAACCATCTGTACACGTTCCACAGAATCGCAAGACTAAGCTATGTGAAAACTATGCTAAGGGTACATGCACTTTTGGGGATAGATGCAACTTTGCACATGGTGCGAATGAGCTGCGGGAGCAGCCTGCCGGGTCCTAA___TCCACTCAGAAACTCACGTGTGCAGAAAGCTTAATTGAATACTTTATTATATTTTGTTTTAGAGGGATAGTCACCATTAAAGTATGTAGACTTGTTAGAAGAGAAGAGCAGTGTTGTTTGGTCTAACTCTTTTGGCTTAGGTATCCTTGCATGTCTAAGAAGTATTCGTTCAACTTTTTGATTAGTTGATTGATTTAATTTAAAACAGTTTAATTTGAATTGCAAGATTCATTAGATTAGGAGTTATGAAGAGCTAATTCAATGCGAAGCTGTTTTATATACAGAATATCCTGATTTAGTAGATATTACAACTAACATGAGCCTCTTGCAAGTGATTTTCCTGGATATTTTCAAGTGTTTTTTCTCTTGAAATTGCAAAA

Fln Alignment:

Contig19150___MDPRKKPKTQLHPNDNGDANPNSTEKESISTALGSKSKACTKFFSPSGCPFGEGCHYLHYVPGGVNAIPQMPTLGNTFGAGSRKTVGLTPGVPSLDKPDPGLGYKTRLCNRFGTDEKCMFGDKCHFAHGEKELRKGNLLAKDLERERIAGPYSSMAASADLEGKPGGHSLYRDPPPGITAAANFGASSTAKISIDASLASCIIGKGGANTKQIFRLTGTKMFIKEHESNPNLKNVELEGSFEQIKQATAMVRELIMHNEMQSAKPSVHVPQNRKTKLCENYAKGTCTFGDRCNFAHGANELREQPAGS
A9NU06________________MDPRKKPKTQLHPNDNGDANPNSTEKESISTALGSKSKACIKFFSTSGCPFGEGCHYLHYVPGGVNAIPPIPTLGNTFGAASRKAIGFTPSVPPLDKPDPGLGFKTRLCNRYGTNEGCQFGDKCHFAHGEKELRKGNVLAKDLDRERIAGPYSSMAAS----GVDSGHSLYRDPPPGTAAAANFGASSTAKISIDASLASCIIGKGGVNTKQIFRITGTKMFIKENESNPNLKNIELEGSFDQIKQATAMVRELIMHNEIQSAKPYV---QNRKTKLCENYAKGTCTFGDRCNFAHGANELREQSAGS

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
114		87	12		0.992554
117	12		87		0.992554
119		12	87		0.992554
120		87		12	0.992554
121		87		12	0.992554
128		12		87	0.992554
129			87	12	0.992554
131	12			87	0.992554
141		11		88	0.923564
142	88		11		0.923564
145			11	88	0.923564
146	88			11	0.923564
147		88	11		0.923564
149		11		88	0.923564
150		11		88	0.923564
152			77	11	0.968132
153			88	11	0.923564
156		11	88		0.923564
157		88		11	0.923564
161	11	88			0.923564
165		11	88		0.923564
166	11	88			0.923564
462	88			11	0.923564
463	87			12	0.992554
465	85		14		0.993533
493		25		75	0.996473
503	75		25		0.996473
576		25		75	0.996473
577			25	75	0.996473
580	25		75		0.996473
582	75	25			0.996473
583		75		25	0.996473
586	75	25			0.996473
590	75			25	0.996473
591	75	25			0.996473
593	80	20			0.995493
643		10	90		0.90298
644	90		10		0.90298
645	90			10	0.90298
646	90	10			0.90298
648			90	10	0.90298
651	90	10			0.90298
652	90	10			0.90298
655			10	90	0.90298
656	90		10		0.90298
661		90		10	0.90298
662	90	10			0.90298
664	90	10			0.90298
665	90			10	0.90298
666		10	90		0.90298
900	85			14	0.993533
901	85			14	0.993533
902	85	14			0.993533
903	85		14		0.993533
904		14		85	0.993533
920		84		15	1.0
922	78	8	13		1.0
923		13	86		1.0
925		86	13		1.0
926			13	86	1.0
928	83	8	8		0.998844
929	82	13	4		1.0
930		8		91	0.999807
932	4	82	4	8	0.999136
933	8			91	0.999807
934	91		8		0.999807
935	86	13			1.0
937			8	91	0.999807
939		8	91		0.999807
941	86	8			0.999539
942			91	8	0.999807
943	86	8			0.999539
1026	91		8		0.999766
1033	90	9			0.999842
1503	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain